1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGTGAGCTCGCTGCAGCCACTAAGAACTTCAGGCAAGATTGCCTTTTAGGAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatctcttaaacatgatgcatcgacattttatctgtgaagctaaatccttccaaatttggcttctgagttgaaacattaagtaaaatattggaaggaaatgctaacataacgattatacttaagccctggattagtcctggatactaacagagttttacttcccag
species | Zea mays |
transcript | GRMZM2G145709_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|148990757|gb|EE048618.2|EE048618
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|76291614|gb|DV031182.1|DV031182
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|89758504|gb|DY687662.1|DY687662
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|149015777|gb|EE045476.2|EE045476
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|148942135|gb|EC887138.2|EC887138
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|148941217|gb|EC886109.2|EC886109
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|148938285|gb|EC882589.2|EC882589
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAAEST: gi|33467045|gb|CF244094.1|CF244094
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
EST: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAG GCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
genomic: GAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatct ... tacttcccagGCTGTTGCTGTGAAACAACTTGATCGTAATGGTCTCCAAGGAAACAGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTGAGCTCGCTGCAGCCACTAAGAACTTCAGGCAAGATTGCCTTTTAGGAGAGGGAGGTTTTGGTCGTGTATATAAAGGACGCTTGGAGAATGGGCAGgtaagtatctcttaaacatgatgcatcgacattttatctgtgaagctaaatccttccaaatttggcttctgagttgaaacattaagtaaaatattggaaggaaatgctaacataacgattatacttaagccctggattagtcctggatactaacagagttttacttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA