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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat...

Basic information

species Zea mays
transcript GRMZM2G145280_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat----------------------------------------------
|| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | ||||   | | |        |      ||| |  ||   ||   || ||  | || | |  ||     |         |||  |  | |   |    | ||                                              
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgta-atttaacatattttcttgttattttgaaacttttta--gtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat-------------------------------------
|| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||||   | | |        |      ||| |  || | || ||  || ||  |   |   ||      |     |     |  | || ||    | | |                                      
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgta-atttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactat-attttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat
||||||||||| ||||| | |   |||||    |||||||||||||| ||||||||||| ||||| |||||||| ||| | |||   ||| | ||  | |||  |   |    |  |  |     |||| |       | || | | |||  ||  |  |  |     | ||||   |   ||    |             
CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttagtaaagtctctacattttctactttaaatgattttgctcttaattttaatagtgtatgtttcttttgtgtgatgtgttttctcag------------

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggc-taataaacagctcat--
|||||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||| | ||    ||  |  | || |||    |    |      |||  | |||      |    |   |   ||  | | ||  | | |||    | |||||   ||    |  ||    |  ||   
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgt-tagtagtagtaat--gtcaacacttctgatattgtcatgtttcgttttaagtttacactacaatc--tctttgggtcttattatgttatgttgtacacag

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggct--aataaacagctcat---------
|| ||||| ||  | || || |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     |  |  |  | |||| |  |           |   |||||  ||  || ||  |  ||||    |  |||| || | | ||   ||  | | |||  |  | ||  ||    ||         
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgtatgggct----------ttttctcttctaggttaacttgtccatttcttgtcattgagtttcta-taccattgtggatttgaatggagtaggcataaaatttgtgggtt

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagt--gtttggcaattg-----gctaataaacagctcat---------------------------------
|| ||||| ||  | || || |||||||||||||| || |||||||| |||||||| || ||||| ||||| || || |||||    ||  | || || ||||    |    ||                 |  |   | || | ||    ||   |   |   ||  | |  ||||    ||       ||| ||     ||||                                   
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccag

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaat--tggctaataaacagctcat-
|| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| ||||| |||||||||||||||||| | ||  |  | |  |||  ||   || ||||      | |   |  |  |||  ||| |   ||   ||     | || |     ||| || ||    |  |      ||   |  | 
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcccaccgctgtattggtgaatttggttacaaactgtccgttatttg---agactctatgatatgtgtgacagcggtaaccctaggacctttggtg

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat-----
|| ||||||||||| ||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  |||  | |    ||      |        || | ||    | |||   ||   |  || | ||   | |    |    |   ||   |||         |      
CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggtttaggct-----ttgttatcctccgtcttttgattatggattagttaattaatttagtaatgaaatcccacgcgtgatcaatgcgtctacaaccatag

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctt-tcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat
|| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  ||||   ||        | ||    | || |     |  |     ||       |  ||| |   ||  |  |||       ||   ||  |  |    || 
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca-

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat---------
|| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  ||||||         |||   |    |||| |  ||  ||   ||        ||| ||| || ||  |  | |||     ||| |  |         | |         
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacg---------gccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc

upper sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 5'ss of exon 2
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttc--agcctacctactatattttgcatgctt--gaattccaactagtgtttggcaattggctaataaacagctcat-
|| || || || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||| | ||  |  | |  ||||     ||    |    | ||    |||      |   |  ||  |||  | |  |   ||| |  || |  | | |    |    || | |  |     || 
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgta-----actatagttttttcggatcttcctgaattggttgttagctttcccttattacggaagtgtaatttttttgtctggaacatctcaaaccctatgaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400340|gb|DN233147.1|DN233147
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389705|gb|FL262572.1|FL262572
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389702|gb|FL262569.1|FL262569
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAGGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|15198791|gb|BI423486.1|BI423486
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211279209|gb|FL194214.1|FL194214
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281009|gb|FL194228.1|FL194228
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60340124|gb|DN207097.1|DN207097
EST:     CCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|89761946|gb|DY689760.1|DY689760
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211426206|gb|FL392503.1|FL392503
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211277402|gb|FL194200.1|FL194200
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|213171408|gb|FM192327.1|FM192327
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60337043|gb|DN204016.1|DN204016
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|30705140|gb|CD058672.1|CD058672
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|8577151|gb|BE129788.1|BE129788
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281011|gb|FL194230.1|FL194230
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281010|gb|FL194229.1|FL194229
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTNCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|149112712|gb|EE191403.2|EE191403
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281012|gb|FL194231.1|FL194231
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74234820|gb|DT642734.1|DT642734
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|71766827|gb|DR964764.1|DR964764
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389701|gb|FL262568.1|FL262568
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|76292773|gb|DV032341.1|DV032341
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|29947149|gb|CB816506.1|CB816506
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|14569404|gb|BI097727.1|BI097727
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|78106398|gb|DV524816.1|DV524816
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74237761|gb|DT645675.1|DT645675
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|32912483|gb|CF017295.1|CF017295
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211271424|gb|FK945754.1|FK945754
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281013|gb|FL194232.1|FL194232
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211441593|gb|FK945760.1|FK945760
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|37416945|gb|CF646124.1|CF646124
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60356573|gb|DN223546.1|DN223546
EST:     CAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389707|gb|FL262574.1|FL262574
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|28873512|gb|CB329492.1|CB329492
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74234821|gb|DT642735.1|DT642735
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|8665447|gb|BE186263.1|BE186263
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389706|gb|FL262573.1|FL262573
EST:     TGTCAAGACGTGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60340943|gb|DN207916.1|DN207916
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1264

CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1072

CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1014

CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 816

CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaca