ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AGGAACTAAGGAAGGTTTGCAATGAAGTATTGTCAGTCATTGCTATTCACTGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacaggttccttgattaagcaaatctgtttctcatttgcctttgccttttctgatgatgccctatttttaatgattatgttcagagtttattttc...

Basic information

species	Zea mays
transcript	GRMZM2G145213_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G145213_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g39540.1 (Oryza sativa), 5'ss of exon 2

AGGAACTAAGGAAGGTTTGCAATGAAGTATTGTCAGTCATTGCTATTCACTGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacaggttccttgattaagcaaatctgtttctcatttgcctttgccttttctgatgatgccctatttt-taatgattatgttcagagtttattttc----
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ATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCCTTCCATTGGCCAATTCGGGTGAAAATGTCGTGTTCTTTTATAAGATgtatgtgcaggttcatcaagtcaatta-tttgcttctcaattgtgttttacttc----atatcggtctatttcctaatggttacattcagaatttattcccaaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78109295|gb|DV527711.1|DV527711

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|6431859|gb|AW172063.1|AW172063

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|22935751|gb|BU572026.1|BU572026

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|74234408|gb|DT642322.1|DT642322

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|211267022|gb|FK966686.1|FK966686

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|74240176|gb|DT648090.1|DT648090

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAATCTGAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAA-CTGAAA

EST: gi|6227145|gb|AW155674.1|AW155674

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTAACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|211267020|gb|FK966684.1|FK966684

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|71302156|gb|DR787186.1|DR787186

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|5566988|gb|AI881899.1|AI881899

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|31353761|gb|CD438118.1|CD438118

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|20300796|gb|BQ163739.1|BQ163739

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGNATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGNTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|78093195|gb|DV521569.1|DV521569

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|67020921|gb|CO449670.1|CO449670

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|101382257|gb|EB813184.1|EB813184

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|44681886|gb|CK786934.1|CK786934

EST:     TGCCTTCCCTTGGCCAGNACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|71448133|gb|DR829183.1|DR829183

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

EST: gi|71444597|gb|DR825647.1|DR825647

EST:     TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGAT                         GAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA
genomic: TGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 126

AGGAACTAAGGAAGGTTTGCAATGAAGTATTGTCAGTCATTGCTATTCACTGCCTTCCCTTGGCCAGTACGGGTGAAAATATCGTATTCTTTTATAAGATgtatgtacag ... actgttgcagGAAAGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAAGCTGCCTCTGATCAGTCACTTATGGCCTATCAG

Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 48

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 123