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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATTGGAGGAGATACTATATCCGTGACAAGTGGAGTTGTCTCTAGGATAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacctttcccccctgaaattataataacttcaaataaacctttatataaagatggatgttgcaagtgaagtaaatctattgagaaataataacttatctgcttaccggcatgtctaatacgggccttgtcttgttgatag

Basic information

species Zea mays
transcript GRMZM2G144501_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 2
TCCAATTGGAGGAGATACTATATCCGTGACAAGTGGAGTTGTCTCTAGGATAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacctttcccccctgaaattataataacttcaaataaacctttatataaagatggatgttgcaagtgaagtaaatctattgagaaataataacttatctgcttaccggcatgtctaatacgggccttgtcttgttgatag
||||||||||||||| || ||||| ||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||| | |||   |||| | ||   ||  ||||    | | | | | |||                   ||  | ||||||||| |||| |  | |   |   ||  | |     || |                  
TCCAATTGGAGGAGACACAATATCTGTGACAAGTGGGGTGGTCTCCAGGATAGAGATACTTTCATATGTTCACGGTTCTACAGAACTTCTAGGATTGCAGgttcattttctccccacaattctcat---ttagaatagtattatctgtgaggat-------------------aacatgttgagaaatcataagtcttttaacttttggggttttatggacag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091067|gb|CF051061.1|CF051061
EST:     TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT
genomic: TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacctttcc ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT
EST: gi|61117927|gb|DN558888.1|DN558888
EST:     TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT
genomic: TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacctttcc ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT
EST: gi|101391369|gb|EB817619.1|EB817619
EST:     TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT
genomic: TAGAAATACTTTCATACGTTCATGGTTCTACAGAACTTCTAGGATTGCAGgtacctttcc ... ttgttgatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGTCCAGCTTTTAATGAT