1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTTGCCGGAGAGACCGCCGCGGCCATGGCCGCCGCGTCCCTCGTGTTCCGCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtactgtaattgtattaatttgtacgtacgtattagcacagtttctcccaaatgcccagaacattagacctcagattttgtaattatgttttcgtcgtcttcag
species | Zea mays |
transcript | GRMZM2G143747_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAG CTGTTCCAGTTCGCCGACAAGTACCGCGGCAAGTACGACGCCAGCATCACTEST: gi|71447399|gb|DR828449.1|DR828449
genomic: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtactgtaat ... tcgtcttcagCTGTTCCAGTTCGCCGACAAGTACCGCGGCAAGTACGACGCCAGCATCACT
EST: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAG CTGTTCCAGTTCGCCGACAAGTACCGCGGCAAGTACGACGCCAGCATCACTEST: gi|149075805|gb|EE164339.2|EE164339
genomic: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtactgtaat ... tcgtcttcagCTGTTCCAGTTCGCCGACAAGTACCGCGGCAAGTACGACGCCAGCATCACT
EST: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAG CTGTTCCAGTTCGCCGACAAGTAC
genomic: GCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtactgtaat ... tcgtcttcagCTGTTCCAGTTCGCCGACAAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTGCCGGAGAGACCGCCGCGGCCATGGCCGCCGCGTCCCTCGTGTTCCGCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtactgtaattgtattaatttgtacgtacgtattagcacagtttctcccaaatgcccagaacattagacctcagattttgtaattatgttttcgtcgtcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG