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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattccactccgtttccttccagttgattgctcctgaattaaacggccacaagtgttgccgcagcttgtctctgaatttggccctctgagtgata...

Basic information

species Zea mays
transcript GRMZM2G143651_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143651_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g57180.1 (Oryza sativa), 5'ss of exon 2
TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattccactccgtttccttccagttgattgctcctgaattaaacggccacaagtgttgccgc-agcttgtctctgaatttggccctctgagtgata-----
 ||||||||||||||| || | |||||| |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||  |   ||  | | |||| | |    ||||| | ||      | ||| ||     |||| | | ||  ||  |||   ||||||| ||  | ||||      
GTGGAGCGGATGGCGCGAGGTACATGTCCGCGAGGGCGCCGGCGGTCAAGGGGACGGGGCATCTCGTCCGCAAGGGAACCGGAGGGAGGTCGTCTGTGAGgtgaggagctcaggctggttccgttcctccgattgattct------atcgggcattcccgttgtcacgagtctgcgtctaggtttggccttcccaatgatttggtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211398059|gb|FL169341.1|FL169341
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398065|gb|FL169347.1|FL169347
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|29947686|gb|CB816784.1|CB816784
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395443|gb|FL169333.1|FL169333
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398057|gb|FL169339.1|FL169339
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|8367566|gb|BE050511.1|BE050511
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395442|gb|FL169332.1|FL169332
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395441|gb|FL169331.1|FL169331
EST:     GGGTCCGGGCATCTCGTCCGCAAGG-CACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392815|gb|FL169318.1|FL169318
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|22545624|gb|BU097983.1|BU097983
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149064147|gb|EE286443.2|EE286443
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|67037324|gb|CO464172.1|CO464172
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31348826|gb|CD433183.1|CD433183
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGCGTTTGGAGCTACTGGGTTTCTTGTTCTCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149074514|gb|EE162909.2|EE162909
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398061|gb|FL169343.1|FL169343
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|148939122|gb|EC883548.2|EC883548
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211390183|gb|FL169301.1|FL169301
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398056|gb|FL169338.1|FL169338
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|20802704|gb|BQ293754.1|BQ293754
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149086938|gb|EE176480.2|EE176480
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398063|gb|FL169345.1|FL169345
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|30087963|gb|CB886168.1|CB886168
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|78087119|gb|DV515512.1|DV515512
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|32850829|gb|CD990510.1|CD990510
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|148977668|gb|EE026094.2|EE026094
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|21809651|gb|BQ667969.1|BQ667969
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGTATGTCTTCTGTGAG                         TGCAATTGTAGCCACGGAGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|148963040|gb|EE013991.2|EE013991
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|148931470|gb|EC874468.2|EC874468
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398062|gb|FL169344.1|FL169344
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|50322405|gb|CO517531.1|CO517531
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398070|gb|FL169352.1|FL169352
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGNAGG-AGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149096347|gb|EE182072.2|EE182072
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395433|gb|FL169323.1|FL169323
EST:     GGTCCGGGCATCTCGTCCGCAATGGCACCGGNATGGAGGTCTTCTGTRAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGTCCGGGCATCTCGTCCGCAAGGGCACCGG-AGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149069994|gb|EE158394.2|EE158394
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392819|gb|FL169322.1|FL169322
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31354660|gb|CD439017.1|CD439017
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392813|gb|FL169316.1|FL169316
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149077783|gb|EE166504.2|EE166504
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31664374|gb|CD573099.1|CD573099
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398060|gb|FL169342.1|FL169342
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31911131|gb|CD651773.1|CD651773
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|30031665|gb|CB833516.1|CB833516
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31348834|gb|CD433191.1|CD433191
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392811|gb|FL169314.1|FL169314
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149069952|gb|EE158352.2|EE158352
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|50322403|gb|CO517529.1|CO517529
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTACCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395446|gb|FL169336.1|FL169336
EST:     GGGTCCGGGCATCTCGTCCGCAAGG-CACCGTAGG-AGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392814|gb|FL169317.1|FL169317
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392809|gb|FL169312.1|FL169312
EST:     GGGTCCGGGCATCTCGTCCGCAAGG-CACCGNAGG-AGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392810|gb|FL169313.1|FL169313
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31358221|gb|CD442578.1|CD442578
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|9794698|gb|BE553006.1|BE553006
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211390188|gb|FL169306.1|FL169306
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211022386|gb|FL169353.1|FL169353
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|32805463|gb|CD957697.1|CD957697
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398066|gb|FL169348.1|FL169348
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211390184|gb|FL169302.1|FL169302
EST:     ATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGNGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: ATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149013853|gb|EE043334.2|EE043334
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149106264|gb|EE291962.2|EE291962
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395437|gb|FL169327.1|FL169327
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211398069|gb|FL169351.1|FL169351
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGTAGG-AGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|71773401|gb|DR971305.1|DR971305
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395438|gb|FL169328.1|FL169328
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|71445608|gb|DR826658.1|DR826658
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392806|gb|FL169309.1|FL169309
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|29577180|gb|CB617292.1|CB617292
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|149055287|gb|EE156221.2|EE156221
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211395436|gb|FL169326.1|FL169326
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGNAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|31612343|gb|CD568965.1|CD568965
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211022388|gb|FL169355.1|FL169355
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAAGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCT
EST: gi|211392808|gb|FL169311.1|FL169311
EST:     GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAG                         TGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGG
genomic: GGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 483

TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCTTGTGCAACAACTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 902

TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCTTGTGCAACAACTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 661

TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCTTGTGCAACAACTTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 613

TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattc ... cccttaatagTGGAATTGTAGCCACGGTGTTTGGAGCTACTGGGTTTCTTGGGCGCTATCTTGTGCAACAACTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAGCGGATGGCGCAAGATGCATGTCTGCGAGGGCGCCGGCGGTCAAGGGGTCCGGGCATCTCGTCCGCAAGGGCACCGGAGGGAGGTCTTCTGTGAGgtgaacattccactccgtttccttccagttgattgctcctgaattaaacggccacaagtgttgccgcagcttgtctctgaatttggccctctgagtgata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactccg