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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCCAAGACCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacaggtcctttgattctcagagcattcttctatcactactttttttctgttactgaactcacccactctgccctagtgattgcaaagcatacta...

Basic information

species Zea mays
transcript GRMZM2G143627_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143627_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g57150.1 (Oryza sativa), 5'ss of exon 2
GAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCCAAGACCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacaggtcctttgattctcagagcattcttctatcactactttttt--tctgttactgaactcacccactctgccctagtgattgcaaagcatacta
 |||||||| ||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| ||||| || ||||||  ||       | || ||   |  |||  | | | || |  ||||  |   |||    | || |   |  |  |   || ||  |   |  |||     
CAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGgtgaagaagatctttgtgcttgcaattgcaagcctttttcccccctttactaacctgcctgttaatttgtctgcattattctggtagtaa-attgcaagtg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211225468|gb|FL266142.1|FL266142
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|60354548|gb|DN221521.1|DN221521
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221345|gb|FL266117.1|FL266117
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|60401166|gb|DN233973.1|DN233973
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211062735|gb|FL266085.1|FL266085
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|60393899|gb|DN226769.1|DN226769
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221337|gb|FL266109.1|FL266109
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|31997738|gb|CD661749.1|CD661749
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211229594|gb|FL266178.1|FL266178
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227529|gb|FL266159.1|FL266159
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|4730668|gb|AI649834.1|AI649834
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|93016913|gb|EB642433.1|EB642433
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211062727|gb|FL266077.1|FL266077
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|6564227|gb|AW231849.1|AW231849
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211219269|gb|FL266097.1|FL266097
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211219268|gb|FL266096.1|FL266096
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221349|gb|FL266121.1|FL266121
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|29945679|gb|CB815762.1|CB815762
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|93016912|gb|EB642432.1|EB642432
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211225464|gb|FL266138.1|FL266138
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211059784|gb|FL266074.1|FL266074
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211225476|gb|FL266150.1|FL266150
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221344|gb|FL266116.1|FL266116
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|29946713|gb|CB816288.1|CB816288
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211062738|gb|FL266088.1|FL266088
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|31441015|gb|CD510446.1|CD510446
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|29130349|gb|CB381053.1|CB381053
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227522|gb|FL266152.1|FL266152
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227528|gb|FL266158.1|FL266158
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211225471|gb|FL266145.1|FL266145
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|5740154|gb|AI947844.1|AI947844
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|31406222|gb|CD484954.1|CD484954
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|31611883|gb|CD568505.1|CD568505
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221346|gb|FL266118.1|FL266118
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211225466|gb|FL266140.1|FL266140
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|16917582|gb|BM073352.1|BM073352
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211059783|gb|FL266073.1|FL266073
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|28910142|gb|CB331283.1|CB331283
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|31997740|gb|CD661750.1|CD661750
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211062729|gb|FL266079.1|FL266079
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211221342|gb|FL266114.1|FL266114
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211219277|gb|FL266105.1|FL266105
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211062731|gb|FL266081.1|FL266081
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211229587|gb|FL266171.1|FL266171
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227533|gb|FL266163.1|FL266163
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227523|gb|FL266153.1|FL266153
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211223401|gb|FL266126.1|FL266126
EST:     CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211229593|gb|FL266177.1|FL266177
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
EST: gi|211227524|gb|FL266154.1|FL266154
EST:     CCGCCGACATGAAGGAGAAGGGCGCTGATCCCTACGACCTCAAACAGCAG                         GAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA
genomic: CCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacag ... atctccgcagGAGAATGTTTTGGCTGAGTCAAGGATGATGGTCCCAGACTGCCACAAACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGAGCTGCGCTCGTACGAGAAGGAGGTGGAGAAGGAGGCTGCCAAGACCGCCGACATGAAGGAGAAGGGCGCCGATCCCTACGACCTCAAACAGCAGgtgctgacaggtcctttgattctcagagcattcttctatcactactttttttctgttactgaactcacccactctgccctagtgattgcaaagcatacta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA