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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATTGATTCTTGATTTGGAGGGTAGGGTTGAAATCCTTGAGTTCCCAGTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctcatttgtaattactgataagagattgccactgttactcgtgctgtatataacttttatataagtgattaacactacccagacatatgcaag...

Basic information

species Zea mays
transcript GRMZM2G143525_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143525_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g24594.5 (Oryza sativa), 5'ss of exon 2
ATTTATTGATTCTTGATTTGGAGGGTAGGGTTGAAATCCTTGAGTTCCCAGTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctcatttgtaattactgataagagattgccactgttactcgtgctgtatataact-tttatataagtgattaacac-tacccagacatatgcaag---
| || ||| | ||||||||||| |||| ||||||||| ||||| ||||||||  | ||||||||||| |||| ||  || || || ||||||||||| ||||||  || ||| ||||   | | ||| |  ||||  | | ||  ||    |  |||  ||| |||  || | |    ||| |   |||| |||||    ||   
ACTTTTTGGTCCTTGATTTGGAAGGTAAGGTTGAAATTCTTGAATTCCCAGTTGTAATGATTGATGCCCAAAGCATGGAGTTCGTCGATTCATTTCACAGgtatagcc-catctgta--cattaata-gttattgaaa-tattcttctcaatacataagactatttgaatgattaccaaactcgcccccaaacatagatgagttt

upper sequence: GRMZM2G143525_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g24594.6 (Oryza sativa), 5'ss of exon 2
----------------------------------------------------------------------------ATTTATTGATTCTTGATTTGGAGGGTAGGGTTGAAATCCTTGAGTTCCCAGTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctcatttgtaattactgataagagattgccactgttactcgtgctgtatataacttttatataagtgattaacactacccagacatatgcaag
                                                                            | || ||| | ||||||||||| |||| ||||||||| ||||| ||||||||  | ||||||||||| |||| ||  || || || ||||||||||| ||||||  || ||| ||||   | | |||                                                                         
TTCAATCACAATCTGCCAACAGACCTTCCAGTGAATTATTCAGCTGCAGATAAAGTGAAATCTCAGAAATTGGATTACTTTTTGGTCCTTGATTTGGAAGgtaaggttgaaattcttgaattcccagttgtaatgattgatgcccaaagcatggagttcgtcgattcatttcacaggtatagcc-catctgta--cattaata-------------------------------------------------------------------------

upper sequence: GRMZM2G143525_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G35090.1 (Glycine max), 5'ss of exon 2
ATTTATTGATTCTTGATTTGGAGGGTAGGGTTGAAATCCTTGAGTTCCCAGTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtatt-acctcatttgtaattactgataagagattgccactgttactcgtgctgtatataacttttatataagtgattaacactacccagacatatgcaag
 |||  |  | |||||||| |||||||||||||| || |||||||| |||||  | ||||||  |||  |||      || |||  ||    || || |||| || | ||      | ||     ||   | |    ||  |||    || | ||   |  ||   ||||   || ||  |  |   ||    | |   | 
TTTTCCTTGTGCTTGATTTAGAGGGTAGGGTTGAGATTCTTGAGTTTCCAGTTCTAATGATTAGTGCGAAAACATTGCAAGTTGAAGACATTTTCCACAGgttttgatctgccactttatagaatatctaacaggtgcagggttcactgttcagtgattgcctgagatattc-tgtttttcttttgacaatgctgttttac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89756149|gb|DY686295.1|DY686295
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|38687506|gb|CK144537.1|CK144537
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACA
EST: gi|93015209|gb|EB640729.1|EB640729
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|71437404|gb|DR818454.1|DR818454
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|89758511|gb|DY687667.1|DY687667
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|71434586|gb|DR815636.1|DR815636
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|213188322|gb|FM193827.1|FM193827
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: gi|50323087|gb|CO518213.1|CO518213
EST:     GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG                         GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA