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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCCACGGCGGCCGGAGCACCCTTCCTCCTCCTGACCCCGAGCTGCCCCGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgttgcccccacggatttggagccggttgttgagttctcggatttggtagatgcgtggctattcgctgctggattgggtaggctcagtcgtgg...

Basic information

species Zea mays
transcript GRMZM2G143356_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148951918|gb|EC897694.2|EC897694
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211103676|gb|FL335622.1|FL335622
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211203502|gb|FL354146.1|FL354146
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|148952030|gb|EC897816.2|EC897816
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|149080754|gb|EE169818.2|EE169818
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211046389|gb|FL323586.1|FL323586
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211283838|gb|FL366656.1|FL366656
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCCCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211019237|gb|FL365611.1|FL365611
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|149075868|gb|EE164419.2|EE164419
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
EST: gi|211078111|gb|FL332550.1|FL332550
EST:     CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAG                         ACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA
genomic: CGCCCATCGCAGCGGGCGGCTCTGCCCTCCGCCGCAGCGTCTGTGTCCAGgtgaggttgt ... gttgtcgtagACTGGAGGATGGAGACTCCGCAAGTCGAGATGGGCGGTTTCAAGGTCAACA