Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71442802|gb|DR823852.1|DR823852EST: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAG GAGTTACTACAGGTGCACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
genomic: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttcca ... gttactacagG--T-------G---CACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
EST:
gi|101386129|gb|EB815105.1|EB815105EST: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAG GTGCACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGAGAGGTCCTCCGA
genomic: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttcca ... gttactacagGTGCACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGAGAGGTCCTCCGA
EST:
gi|76913751|gb|DV165250.1|DV165250EST: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAG GAGTTACTACAGGTGCACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
genomic: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttcca ... gttactacagG--T-------G---CACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
EST:
gi|71441953|gb|DR823003.1|DR823003EST: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAG GAGTTACTACAGGTGCACCAACAGCAAATGCACAGTGAAAAAGCGCGTGGA
genomic: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttcca ... gttactacagG--T-------G---CACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
EST:
gi|71428707|gb|DR809757.1|DR809757EST: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAG GAGTTACTACAGGTGCACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
genomic: AGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttcca ... gttactacagG--T-------G---CACCAACAGCAAATGCACAGTGAAGAAGCGCGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTCGCGTTCATGACCAAGACCGAGCTCGATCACCTCGACGACGGCTATAGATGGAGGAAGTATGGCCAGAAAGCTGTCAAGAACAGCCCTTTCCCAAGgttggttccattgcttaaatagatggacgggacctaataaactgctaagctagtgtaaaaccttattagctatgtcttgcattgtctaattttatgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC