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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTGACAGTCACCCTATACATAGAGATTCTGACATTGCCAATCATAAAAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAGgtatgttctgttttatgatgtatctttcctttccgttttatatgtctagcattgtggaattctgtggttgtacacgcaggttgccatgctacatgataattaactctacacacgattatggttgatctttggtctgtag

Basic information

species Zea mays
transcript GRMZM2G142964_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142964_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g36630.1 (Oryza sativa), 5'ss of exon 2
TATCTTGACAGTCACCCTATACATAGAGATTCTGACATTGCCAATCATAAAAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAGgtatgttctgttttatgatgtatctt------tcctttccgttttatatgtctagcattgtggaattct-------gtggttgtacacgcaggttgccatgctacatgataattaactctacacacgattatg-gttgatctttggtctgtag-----
|||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||  ||||||||| | ||||||||| |||    |||      |  | |  | |||| |||| |  ||||| ||  ||||       |||| | |  ||         |||   |  | | | || | | |||   |  |  ||  |||   |||  |||         
TATCTTGATAGTCATCCTATACATCGAGATTCTGACATTGCCAACCATACAAATGAAATAAACTGTGCTGACTATCGGTTTGTTTACATGGGACCAAAAGgtaagctctgttttaagattctacttatgtgttgttctgagctttacatgtatgacattgaggtgttctttcttccgtggctatgaacatgatcacacattagatgttacacttcaatttactatctttcttgtattgtgatttcatcttctacgtag

upper sequence: GRMZM2G142964_T05 (Zea mays), 5'ss of exon 2
lower sequence: AT5G63080.1 (Arabidopsis thaliana), 5'ss of exon 3
TATCTTGACAGTCACCCTATACATAGAGATTCTGACATTGCCAATCATAAAAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAGgtatgttctgttttatgatgtatctttcctttccgttttatatgtctagcattgtggaattctgtggttgtacacgcaggttgccatgctacatgataattaactctacacacgattatggttgatctttggtctgtag
||||| |||| | |||  || |||   |||   || | |  | |  |  |  || |||||| ||| |||||||||||||||||||| ||||| |  |||||| ||            | | | || |   |   ||| | | | |  ||  || |||  ||  |     |   |       ||  ||  |   ||                                            
TATCTAGACAATTACCAAATGCATGAGGATAGAGATAGTTTCCAGAAGTATGATCAAATAAGCTGCTCTGATTATCGGTTTGTTTATATGGGTGGGAAAGgtctgagtaaaagatcaaagaaactgtttgtgttgttgtttgt-ttgagtgttttggcctttggaaaaagctgatcatttctgatatcttggctgcag-----------------------------------------

upper sequence: GRMZM2G142964_T05 (Zea mays), 5'ss of exon 2
lower sequence: Vv17s0000g08880.t01 (Vitis vinifera), 5'ss of exon 3
TATCTTGACAGTCACCCTATACATAGAGATTCTGACATTGCCAATCATAAAAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAGgtatgttctg--ttttatgatgtatctttcc---------tttccgttttatatgtctagcattgtggaattctg--tggttgtac--acgcaggttg---ccatgctacatgataattaactctacacacgattatggttgatctttggtctgtag-----
||||| |||| | |   ||| ||||  ||  ||||   |    |  | ||||||||||| |  || |||||||||||||||||||||||||| |||||||||  |   |     | ||||  ||| |||           ||  | | |||| ||| |  | |||||| |    |  | ||| | |  |   || ||    |  |  |  || ||  || | ||||  ||| | ||    | |  ||||||   |       
TATCTCGACAATTATAGTATGCATAATGAACCTGATGCTTGTCAAGAGAAAAATGAAATTAGTTGCTCTGATTATCGGTTTGTTTACATGGGAGCAAAAGgttcgacttagacatgatgaaatatttttgtatgacatggttatcatcttatctgtatttccttgtggcagatagactagttttgctgatttagtttaattcttttttggataattgtttattctatgcacaactac--ctaaattttggttcttcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874245|gb|EB404202.1|EB404202
EST:     AAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAG                         GAACCTGGACTCCTCTGCATGCTGATGTTTTTAGGTCATACAGCTGGTCAG
genomic: AAATGAAATAAACTGTTCTGATTATCGGTTTGTTTACATGGGGGCAAAAGgtatgttctg ... tggtctgtagGAACCTGGACTCCTCTGCATGCTGATGTTTTTAGGTCATACAGCTGGTCAG