1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAGGAAGGTCGATCTCAATGCCCATCGCTCTTACAAGACCCTTGCCTCAGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcatatagtctgatcttttactttcactatatatatatatatatatatatatagtagaacccagttgcatacttggctatacacttaggacacgacactgtactagatatagtttcataagtctgcgaggatgttttttctgctctcatttctgaacctgatttgtactgatcgtgaaaattatcag
species | Zea mays |
transcript | GRMZM2G142768_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|60399806|gb|DN232616.1|DN232616
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTATACAGCTCATCGGAGTATCAGCTCAEST: gi|71444561|gb|DR825611.1|DR825611
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71437812|gb|DR818862.1|DR818862
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: GCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCEST: gi|149083987|gb|EE173375.2|EE173375
genomic: GCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTT-GCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATC
EST: CATGTTCAGGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|91049936|gb|EB160354.1|EB160354
genomic: CATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|13198669|gb|BG354471.1|BG354471
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|50333994|gb|CO529120.1|CO529120
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|76924731|gb|DV170106.1|DV170106
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71418902|gb|DR804585.1|DR804585
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTEST: gi|148961892|gb|EE012679.2|EE012679
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCT
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTEST: gi|78090139|gb|DV518513.1|DV518513
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATT
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71301549|gb|DR786822.1|DR786822
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71768772|gb|DR966709.1|DR966709
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71433960|gb|DR815010.1|DR815010
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCNTAA-GCTATTAGACAGCTCATCGGAGTATCAGCTCEST: gi|71768773|gb|DR966710.1|DR966710
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTC-TAAAGCTATTAGACAGCTCATCGGAGTATCAGCTC
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|60350167|gb|DN217140.1|DN217140
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|91050039|gb|EB160457.1|EB160457
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|71758859|gb|DR956796.1|DR956796
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|78114895|gb|DV533283.1|DV533283
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|113702671|gb|EE680175.1|EE680175
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|93011702|gb|EB637222.1|EB637222
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|78078295|gb|DV506710.1|DV506710
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCCAAGACTCTAAAGCEST: gi|71433959|gb|DR815009.1|DR815009
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGC
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|149000117|gb|EE037243.2|EE037243
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCAEST: gi|94477809|gb|EB706767.1|EB706767
genomic: AGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
EST: GCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTA GCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
genomic: GCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcata ... aaattatcagGCAGTTCAAAGACTCTAAAGCTATTAGACAGCTCATCGGAGTATCAGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGAAGGTCGATCTCAATGCCCATCGCTCTTACAAGACCCTTGCCTCAGCACTTGAGCTCATGTTCATGAAGCCGTCCATTGGTCTTTGCACTTCTAgtaagtcatatagtctgatcttttactttcactatatatatatatatatatatatatagtagaacccagttgcatacttggctatacacttaggacacgacactgtactagatatagtttcataagtctgcgaggatgttttttctgctctcatttctgaacctgatttgtactgatcgtgaaaattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC