1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTAAAAGGAACCTCTGTGAAATCATTCAATAGTGTCATCATGAAATTTCCTAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagctttacccctttatctgaaccaacactatggtaccgtgcatttaaatgtcaaaacttcacataaaacttgatgtatagttgaaatatgtaaattt...
species | Zea mays |
transcript | GRMZM2G142693_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211260869|gb|FL247908.1|FL247908
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211263296|gb|FL247911.1|FL247911
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCEST: gi|211263294|gb|FL247909.1|FL247909
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211263305|gb|FL247920.1|FL247920
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: AAAATCGACGAGAGTTTGAGAAACTNCCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211263302|gb|FL247917.1|FL247917
genomic: AAAATCGACGAGAGTTTGAGAAACTGC-AGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAAATGGTGAAATAGATCAACTGGEST: gi|71438786|gb|DR819836.1|DR819836
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAA-TGGTGAAATAGATCAACTGG
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211263300|gb|FL247915.1|FL247915
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|67033577|gb|CO462326.1|CO462326
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211263301|gb|FL247916.1|FL247916
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCCEST: gi|211265738|gb|FL247926.1|FL247926
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTTTCC
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAAATGGTGAAATAGATCAACTGGAACTCAAGCGTTGTEST: gi|211263304|gb|FL247919.1|FL247919
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAA-TGGTGAAATAGATCAACTGGAACTCAAGCGTTGT
EST: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTG ATGAAGATTCCAATGGTGAAATAGATC
genomic: TAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagcttta ... atttatgcagATGAAGATTCCAATGGTGAAATAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAAAGGAACCTCTGTGAAATCATTCAATAGTGTCATCATGAAATTTCCTAAAATCGACGAGAGTTTGAGAAACTGCAGGACTATCTTCCAGGAATTTGgtgagctttacccctttatctgaaccaacactatggtaccgtgcatttaaatgtcaaaacttcacataaaacttgatgtatagttgaaatatgtaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaaa