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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGAACTTTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgctgttacatttttataagagatttataagcttatagaaaatgtttgttatggaaagaacttacatttgttctatag

Basic information

species Zea mays
transcript GRMZM2G142640_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142640_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 5'ss of exon 3
GACGGAACTTTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgtta--ctcgctgttacattttta-taagagatttataagcttatagaaaatgtttgttatggaaagaacttacatttgttctatag
     | |||||||| || || ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||| ||||| |  ||     |   ||  ||  |   |  |    |   || |       |   ||| | | ||     |   | | || || ||
-----AGCTTTGCCGTTTTAGTGGCCAGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgttcatcgaatgattgctttaatgtcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgtacag

upper sequence: GRMZM2G142640_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g40820.1 (Oryza sativa), 5'ss of exon 3
GACGGAACTTTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgtta--ctcgctgttacattttta-taagagatttataagcttatagaaaatgtttgttatggaaagaacttacatttgttctatag
||| || |||||||| || || ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||| ||||| |  ||     |   ||  ||  |   |  |    |   || |       |   ||| | | ||     |   | | || || ||
GACAGAGCTTTGCCGTTTTAGTGGCCAGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgttcatcgaatgattgctttaatgtcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgtacag

upper sequence: GRMZM2G142640_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 5'ss of exon 2
GACGGAACTTTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgctgt-tacattttta--taag-agatttataagcttatagaaaatgtttgttatggaaagaacttacatttgttctatag---------
|||||| ||||| || ||||| || ||||||||||| || || | ||| ||||| ||||||||  ||||||||||||||  |   | | |  || || |  |||  | ||| ||  | |||||         |||| |||    |   |     || | | ||          
GACGGAGCTTTGTCGTTTCAGTGGACAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGATCTGATTCTCAGgttggttcttttatgaatcttcagctaatcaaattgatttgtttatactttgcaaatgttttggttttagtcttttaatggtttgtattgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9952995|gb|BE639578.1|BE639578
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|5456231|gb|AI833921.1|AI833921
EST:     CATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: CATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|67024843|gb|CO453592.1|CO453592
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|24767969|gb|CA403102.1|CA403102
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60339160|gb|DN206133.1|DN206133
EST:     AGAAGATTTTTCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211529720|gb|FL481427.1|FL481427
EST:     GCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|78025581|gb|DV493968.1|DV493968
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60338669|gb|DN205642.1|DN205642
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|16926354|gb|BM079422.1|BM079422
EST:     CCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: CCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|86470272|gb|DY236642.1|DY236642
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211180303|gb|FL410015.1|FL410015
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTNGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|16137349|gb|BI894214.1|BI894214
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|78077048|gb|DV505482.1|DV505482
EST:     TCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: TCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|78027478|gb|DV495865.1|DV495865
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|76020605|gb|DT947775.1|DT947775
EST:     GAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|32858460|gb|CD998141.1|CD998141
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211437810|gb|FL445238.1|FL445238
EST:     TAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: TAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|32865027|gb|CF004709.1|CF004709
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211133239|gb|FL429638.1|FL429638
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTNAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211389524|gb|FL368033.1|FL368033
EST:     GATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|16137348|gb|BI894213.1|BI894213
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|22819537|gb|BU499627.1|BU499627
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|31360690|gb|CD445047.1|CD445047
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTGCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|21760033|gb|BQ635574.1|BQ635574
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|5006228|gb|AI712290.1|AI712290
EST:     TTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCNCAACCGCCTG
genomic: TTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|22715310|gb|BU197696.1|BU197696
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211530300|gb|FL400695.1|FL400695
EST:     AGAAGATTTATCCTGGGAAAGGCATWAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|31353813|gb|CD438170.1|CD438170
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|15188208|gb|BI417185.1|BI417185
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60393960|gb|DN226830.1|DN226830
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|76020606|gb|DT947776.1|DT947776
EST:     GAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|83279343|gb|DV943351.1|DV943351
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGATGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60342152|gb|DN209125.1|DN209125
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60338815|gb|DN205788.1|DN205788
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|32858470|gb|CD998151.1|CD998151
EST:     GAAGATTTATCCTCGGGAAAGGCATTAGATTTATCCGGGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GAAGATTTATCCT-GGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|31354798|gb|CD439155.1|CD439155
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|6526738|gb|AW216019.1|AW216019
EST:     TTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCCCAACCGCCTG
genomic: TTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60345067|gb|DN212040.1|DN212040
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|15177592|gb|BI398531.1|BI398531
EST:     AGAAGA-TTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211155827|gb|FL453579.1|FL453579
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|60343076|gb|DN210049.1|DN210049
EST:     AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAG                         GTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgct ... tgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGGAACTTTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATTAGATTTATCCGTGCTGATTCTCAGgttactcgctgttacatttttataagagatttataagcttatagaaaatgtttgttatggaaagaacttacatttgttctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT