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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGATAGAAAAGGAAAGGGAGAAGCCTTGTCATGATCCCAGTATTCCAGACACAGAAATCCCTTACTTGCACTACCCGATGCCAAATACTTATGATAGgtaatgaagatatatactgggtcatgtgattttcctttttctatttatttccaggttagtgtctgacttgcatgttctttgtctgttag

Basic information

species Zea mays
transcript GRMZM2G142507_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71757299|gb|DR955236.1|DR955236
EST:     GACACAGAAATCCCTTACTTGCACTACCCGATGCCAAATACTTATGATAG                         GAAAGAATGTGCGTGCACAGGGGTTAGGTTCTTTGCTATCTTGTCAATGCA
genomic: GACACAGAAATCCCTTACTTGCACTACCCGATGCCAAATACTTATGATAGgtaatgaaga ... tgtctgttagGAAAGAATGTGCGTGCACAGGGGTTAGGTTCTTTGCTATCTTGTCAATGCA
EST: gi|29945996|gb|CB815926.1|CB815926
EST:     GACACAGAAATCCCTTACTTGCACTACCCGATGCCAAATACTTATGATAG                         GAAAGAATGTGCGTGCACAGGGGTTAGGTTCTTTGCTATCTTGTCAATGCA
genomic: GACACAGAAATCCCTTACTTGCACTACCCGATGCCAAATACTTATGATAGgtaatgaaga ... tgtctgttagGAAAGAATGTGCGTGCACAGGGGTTAGGTTCTTTGCTATCTTGTCAATGCA