1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCATCACCACGTCCGGCCAAATCCAACCCCTCAAAATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttttcagaaatctggtattcgtttcagttgtgatgatataggcaggcagctccagtaggtgttgttggataggcagaagaaattccccttctcagcaatctaaacctgtatgcttcttttcccttttgatctccag
species | Zea mays |
transcript | GRMZM2G142502_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------G---- ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|71438193|gb|DR819243.1|DR819243
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|149014312|gb|EE043889.2|EE043889
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|149079392|gb|EE168367.2|EE168367
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|148970848|gb|EE021623.2|EE021623
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|93284127|gb|EB676391.1|EB676391
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|148959588|gb|EC905543.2|EC905543
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTEST: gi|211357440|gb|FL362287.1|FL362287
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAAT ATCTTCCAGGGTGGCCGTTGTTCCCGCCTCCTAAGGTGCAGCTGGACAAGTEST: gi|78082996|gb|DV511389.1|DV511389
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG---A----------T --CTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
genomic: TGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttt ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATCACCACGTCCGGCCAAATCCAACCCCTCAAAATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAGAAATgtatgtcttttcagaaatctggtattcgtttcagttgtgatgatataggcaggcagctccagtaggtgttgttggataggcagaagaaattccccttctcagcaatctaaacctgtatgcttcttttcccttttgatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG