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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGGAGAGCAGCCATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGTTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcacatagccttctgccaatcagtgctggttgttactgtcttgtcatatcatcgatacttttatgaacaatatgattttgttgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G141931_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141931_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 2
CCGAGGAGAGCAGCCATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGTTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcacatagccttctgccaatcagtgctggttgttactgtcttgtcatatcatcgatacttttatgaacaatatgattttgttgcgtgcag
| || || ||||   |||| || | | | || |||||||||||||||||| |||||| ||| || |||||||||||||| |||||||||||||  ||||||||  ||    ||||||   |||| ||||| | ||| |  |||| |  | |  | ||||  | ||||| |||||||       || ||||||
CTGATGACAGCACTGATGAGTTAGTTGATCCGCCGAAGGTAGAGGAGAAGATTGGTGGTGTTCCCCATGGCCTGTCCACGGACTCTGAGGTTGTTCAGAGgtgtgcacgatcttctg---atcaatgctgatcgtttccatcttattgtgttgttgatatctgtatgagcaatatgg----aatgtgtgcag

upper sequence: GRMZM2G141931_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 2
-CCGAGGAGAGCAGCCATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGTTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcacatagccttctgccaatcagtgctggttgttactgtcttgtcatatcatcgatacttttatgaacaatatgattttgttgcgtgcag
 ||||||       | | ||  | |   | || |||||||| ||||| ||| | |||||||| ||||||||||| |||||||| || || || | | |||||||  | | |  |  |  |        ||  ||  || |||  | |  | ||   | |   |  | | ||    || | ||||    |||| 
GCCGAGGGAGATTCCGACGAGCTTGTAGATCCTCCGAAGGTGGAGGACAAGATCGGTGCTGTGCCTCATGGCCTTTCCACCGATTCAGATGTCGTCAAGAggtgtgcgttgtttgatttct-------cttttttctattgttctcttgtttc--tggtgtctaaacgcacg-cgtgttgttgtgat-tgcaa