1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGATGAGGCAGAGGGCGGAGGAGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtccagtccatttgctcagtatattccgatcatggaattctatcccagtccatttgatgtgggaagttaccttcatatgtgataatgtgaact...
species | Zea mays |
transcript | GRMZM2G141735_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|76919350|gb|DV167672.1|DV167672
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|78089289|gb|DV517663.1|DV517663
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|148933679|gb|EC877578.2|EC877578
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|211158783|gb|FL331247.1|FL331247
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAG GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTEST: gi|76911768|gb|DV164422.1|DV164422
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCT
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|71436217|gb|DR817267.1|DR817267
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAGEST: gi|74242909|gb|DT650823.1|DT650823
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
EST: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCAT GTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
genomic: AGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtc ... atgccttcagGTTCTGAAGAGTTCCTGGAACTCGTCAAGAGTGCGCTTCTTGCGGCCCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATGAGGCAGAGGGCGGAGGAGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtccagtccatttgctcagtatattccgatcatggaattctatcccagtccatttgatgtgggaagttaccttcatatgtgataatgtgaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccagtcc