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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACCTTATCCCCGTGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatatatctatttgcaagtgatgcagcttccctccactttttccccagtcattcatcacaacattgtgtccttggtctgatctctgatcattctgcatgttctatag

Basic information

species Zea mays
transcript GRMZM2G141094_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141094_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g70200.1 (Oryza sativa), 5'ss of exon 3
CTCACCTTATCCCCGTGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatatatctatttgcaagtgatgcagcttccctccactttttccccagtcattcatcacaacattgtgtccttggtctgatctctgatcattctgcatgttctatag-
|||| ||||| |||   |||||||||||||||||||| || || |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||  |     ||| | |||          | |   | |   | | | || |   || |  ||               | ||   ||||||  ||||| |||| ||||   
CTCATCTTATTCCCCCAGACACCCCTCGGTCTATCTTTGTATATTTCCGTGGTCTGTTCTACGATACCAGCAATGATCCTGAGGGTGGATACTATGCAAGgtaaattttccgcttatctccaa----------tacatcctatcatctgctcattggctcgtagca---------------tgtggagtctgatgtttctgtatgtcctatcag

upper sequence: GRMZM2G141094_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
CTCACCTTATCCCCGTGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatatatctatttgcaagtgatgcagcttccctccactttttccccagtcattcatcacaacattgtgtccttggtctgatctctgatcattctgcatgttctatag-
| ||||| || |||   || ||||||||||| |||||||| |||||||||||| |||| || ||    |  || || ||||| |||||||||||||| |||||           | |  |  |||| |     || |||     |||||| |  | ||| |  |   |||||     ||| |   ||     ||        | |   ||    
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgta-----------tgtgggttagtgttttttttttcctttttcttttcctc--ttattgagaattgcattg-aaatttgataccatgggcaattcaataataggggttaggtt