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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCTAGTTCCAGAAGGCTATATAGATGGAAAAGGGTATTGCTCAAAGTAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttcttttggtggagcatctttaaacactgacagcagacgatttatatgagtgggtcatggaaattgatgtgaacatgtgctctattgcag

Basic information

species Zea mays
transcript GRMZM2G139462_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139462_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g73450.1 (Oryza sativa), 5'ss of exon 2
TTCTTCTAGTTCCAGAAGGCTATATAGATGGAAAAGGGTATTGCTCAAAGTAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttcttttggtggagcatctttaaacactgacagcagacgatttatatgagtgggtcatggaaattgatgtgaacatgtgctctattgcag
    ||||| || | || || |||||||||| ||||||| ||||| |||||||||||||| |||||||| ||  ||||||||||||| || || |||||||| |   | ||||| |||||||||  | |||     |   | ||  ||||    ||   ||||||| || |   ||| |   |||    | ||||||
AGGCTCTAGATCTAAAAAGCCATATAGATGGCAAAGGGTGTTGCTTAAAGTAAGTGGGGAGGCTCTTGCTGGAGATCACACAGAAAATATTGATCCAAAGgtgaggttgcttttagtggagcattatcaaatttaaaatactgaatatttgatggaacaggtcatgtaagt--gtgtaa---tgt----tgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211175205|gb|FL094962.1|FL094962
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|76917142|gb|DV166699.1|DV166699
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAGAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175204|gb|FL094961.1|FL094961
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211173536|gb|FL094956.1|FL094956
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211173532|gb|FL094952.1|FL094952
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175211|gb|FL094968.1|FL094968
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|91878696|gb|EB408653.1|EB408653
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175206|gb|FL094963.1|FL094963
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         AT-ACAATGGCTATTGCAAGAGAA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAA
EST: gi|211173530|gb|FL094950.1|FL094950
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGT-GCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175215|gb|FL094972.1|FL094972
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175210|gb|FL094967.1|FL094967
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAA
EST: gi|211173535|gb|FL094955.1|FL094955
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAG
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAG
EST: gi|211175207|gb|FL094964.1|FL094964
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211175212|gb|FL094969.1|FL094969
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: gi|211173531|gb|FL094951.1|FL094951
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGGCAAGAGAAGTTGCTTCTGTCACCAAACTAGG
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTG-CAAGAGAAGTTGCTTCTGTCACCAAACTAGG
EST: gi|211175202|gb|FL094959.1|FL094959
EST:     TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG                         ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTA