1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAATGGACTGCAAGCTATTGTACAGTCAGGGTTTTCTGCAGATGAATTGGTTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAGgcaagttgttttggtgtttccattgctgctccctcatatacagcttcgtcctgggcagtgggatgctttgatgtgtacatggggtttctaaataatccaatatatcatgatatggtgatctttctttatgatgcacacataccaatgccatgatcaggtttccattctcttttcag
species | Zea mays |
transcript | GRMZM2G139329_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCCAGAGACACACTTGGAG GAGCGCCAATGTTGACCTTTTTAAAA-CCTGGTACATGAATATGATTACACEST: gi|148971073|gb|EE021914.2|EE021914
genomic: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAGgcaagttgtt ... ctcttttcagGAGCGC-AATGTTGACCTTTTTAAAAACCTGGTACATGAATATGATTACAC
EST: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAG GAGCGCAATGTTGACCTTTTTAAAAACCTGGTACATGAATATGATTACACCEST: gi|76288147|gb|DV027715.1|DV027715
genomic: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAGgcaagttgtt ... ctcttttcagGAGCGCAATGTTGACCTTTTTAAAAACCTGGTACATGAATATGATTACACC
EST: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAG GAGCGCAATGTTGACCTTTTTAAAAACCTGGTACATGAATATGATTACACC
genomic: TTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAGgcaagttgtt ... ctcttttcagGAGCGCAATGTTGACCTTTTTAAAAACCTGGTACATGAATATGATTACACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATGGACTGCAAGCTATTGTACAGTCAGGGTTTTCTGCAGATGAATTGGTTGCCAGAGAGAACTTTGACGTCTTATGTCTTCAAGAGACACACTTGGAGgcaagttgttttggtgtttccattgctgctccctcatatacagcttcgtcctgggcagtgggatgctttgatgtgtacatggggtttctaaataatccaatatatcatgatatggtgatctttctttatgatgcacacataccaatgccatgatcaggtttccattctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG