1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTATCGAGCACCAGAGCTCATATTTGGTGCAACGGAATATACTACTGCTATTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatgttcagtttccctccctctggttcttacctttttgcttcttctgatatcattcatccatgtag
species | Zea mays |
transcript | GRMZM2G138676_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAG CCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAGEST: gi|71322556|gb|DR797955.1|DR797955
genomic: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatg ... atccatgtagGCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG
EST: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAG GCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAGEST: gi|71312506|gb|DR792786.1|DR792786
genomic: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatg ... atccatgtagGCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG
EST: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAG GCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG
genomic: TTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatg ... atccatgtagGCTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCGAGCACCAGAGCTCATATTTGGTGCAACGGAATATACTACTGCTATTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatgttcagtttccctccctctggttcttacctttttgcttcttctgatatcattcatccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT