1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAATGGATTCAAGGGGGCAGCCAACTCGGTGGAGTTCCTGGGTAGGGAGATGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttctaccactctttggttggcatatggatggttgaaattagtgtcaatgttttggttaccactttcagtcaaatacatgtacaggctctgtctt...
species | Zea mays |
transcript | GRMZM2G138676_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGTEST: gi|6095487|gb|AW120154.1|AW120154
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGTEST: gi|211457740|gb|FL227180.1|FL227180
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGTEST: gi|71322558|gb|DR797956.1|DR797956
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATGGATTCAAGGGGGCAGCCAACTCGGTGGAGTTCCTGGGTAGGGAGATGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttctaccactctttggttggcatatggatggttgaaattagtgtcaatgttttggttaccactttcagtcaaatacatgtacaggctctgtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG