Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAGTTGGAGATGACAGGATAGTCATTGTGGCCTCCGGTGTATGCACAGGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattgtctttcaggcatgtccattccagtttaacatatgttatcttcagaagatgagtttatcaaatatcaagattttataaccgattagtttcc...

Basic information

species Zea mays
transcript GRMZM2G138176_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211186200|gb|FL226979.1|FL226979
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|31360411|gb|CD444768.1|CD444768
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|149021310|gb|EE045776.2|EE045776
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71309640|gb|DR791098.1|DR791098
EST:     ATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTTATCCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCA
genomic: ATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACT-ATC-ATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCA
EST: gi|76915901|gb|DV166158.1|DV166158
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|148957639|gb|EC903748.2|EC903748
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGAACGCATGAATGACTTGGTGGATATCACTGGCTCACAAATTCA
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTG-ATATCACTGGCTCACAAATTCA
EST: gi|211186203|gb|FL226982.1|FL226982
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|76012671|gb|DT939841.1|DT939841
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|76918299|gb|DV167237.1|DV167237
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|88757545|gb|DY541686.1|DY541686
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|89253166|gb|DY624952.1|DY624952
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71433844|gb|DR814894.1|DR814894
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71445757|gb|DR826807.1|DR826807
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211188599|gb|FL226988.1|FL226988
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|88757388|gb|DY541529.1|DY541529
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71450112|gb|DR831162.1|DR831162
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|149109596|gb|EE190280.2|EE190280
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|76019054|gb|DT946224.1|DT946224
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|74244136|gb|DT652050.1|DT652050
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|149072118|gb|EE160356.2|EE160356
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71310021|gb|DR791299.1|DR791299
EST:     GATGGCGTGACACCTTGGGGTNNNNNNNTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GATGGCGTGACACCTTGGGGTGGGGGG-TTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|78079510|gb|DV507922.1|DV507922
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211305543|gb|FL417489.1|FL417489
EST:     GAGTGGCGTGACACCTTSGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGA
genomic: GA-TGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGA
EST: gi|91875020|gb|EB404977.1|EB404977
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|149000833|gb|EE038060.2|EE038060
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71322734|gb|DR798048.1|DR798048
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|148952248|gb|EC898054.2|EC898054
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|93282901|gb|EB675165.1|EB675165
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211186206|gb|FL226985.1|FL226985
EST:     GGATGGCGTGACACCTTNGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211186202|gb|FL226981.1|FL226981
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|67019641|gb|CO448390.1|CO448390
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71774178|gb|DR972058.1|DR972058
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|50329329|gb|CO524455.1|CO524455
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|67019677|gb|CO448426.1|CO448426
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|74239737|gb|DT647651.1|DT647651
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211186201|gb|FL226980.1|FL226980
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|6021103|gb|AW066031.1|AW066031
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAGTTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|76288557|gb|DV028125.1|DV028125
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|76918592|gb|DV167365.1|DV167365
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|78123919|gb|DV542303.1|DV542303
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|78108354|gb|DV526772.1|DV526772
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|78084632|gb|DV513025.1|DV513025
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211186207|gb|FL226986.1|FL226986
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTG
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTG
EST: gi|211186208|gb|FL226987.1|FL226987
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCT
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCT
EST: gi|89761642|gb|DY689571.1|DY689571
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|71766165|gb|DR964102.1|DR964102
EST:     GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCAC
EST: gi|211186205|gb|FL226984.1|FL226984
EST:     GGATGGCGTGACACCTTGGGGTGGGGG-TTGCAAATCTTTCACTATCATG                         GTGCCAGGACCGCATGAATGACTTGGTGAT
genomic: GGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 599

CACTAGTTGGAGATGACAGGATAGTCATTGTGGCCTCCGGTGTATGCACAGGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCACGAAGCTGCAAGTTCTATCTCTACGCCAGATCAGGCCTCAGCTAGAAGAC


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 51

CACTAGTTGGAGATGACAGGATAGTCATTGTGGCCTCCGGTGTATGCACAGGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCACGAAGCTGCAAGTTCTATCTCTACGCCAGATCAGGCCTCAGCTAGAAGAC


Block sizes: 47 (upstream exon), 37 (downstream exon)
Score: 19

CACTAGTTGGAGATGACAGGATAGTCATTGTGGCCTCCGGTGTATGCACAGGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCACGAAGCTGCAAGTTCTATCTCTACGCCAGATCAGGCCTCAGCTAGAAGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 325

CACTAGTTGGAGATGACAGGATAGTCATTGTGGCCTCCGGTGTATGCACAGGATGGCGTGACACCTTGGGGTGGGGGGTTGCAAATCTTTCACTATCATGgtaagaattg ... tcaaattcagGTGCCAGGACCGCATGAATGACTTGGTGATATCACTGGCTCACAAATTCACGAAGCTGCAAGTTCTATCTCTACGCCAGATCAGGCCTCAGCTAGAAGAC