Sequence
atgc intronic sequence ATGC exonic sequenceACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 2
---ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag
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GGCTCAGCCCCCGTC---AAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGgtacatgacat--ttcatcttgacaaaccatcaattttctatatttctc--tcataacttacttataggttcctgacttcttcctgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 5'ss of exon 3
ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacg---ctcta-----------gcttgacaaa----tggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag----------------------------------------------------------------------
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TCCACCCGCGAGGGGAAGGCACCAGCTCTCAATGAGAGGATACTCTCATCCATGTCCAAGAGATCTGTTGCAGCACACCCATGGCATGACCTTGAGATTGgtaaaatactcgtaactctattctctactctactctactaactgctgctcaaccacctcactttggagtatttcgttactagtagtgatttccttgggtacacgttacccttcagatttctattatatttcttaggttcaaaaattcatcattttccctcctttgctttgcttgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G33000.6 (Glycine max), 5'ss of exon 4
ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag
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TATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCATCCATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaa-gcattcagaaataggtaaaaaacggtgacttgttagtg-cttcaattggtttgccaaggt--aaccaattctgttttaatgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 2
-ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgta--ttgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag-------------------
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AGCTATCAACAGTCCCCAAACCCTCGTCTT-AACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatgtaattgtaaaattgtgacatcttaatgttttgatc---gtgatgtatttcttttttcttactttattttgtatgttaactgtattttctccacaatgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 4
-ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacgctctagcttgacaaatggtcagccgttgat-ctctgctatttgcaaccagagcttaagttcatcttggattcatgcag------------------------------------
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ATTTCTCATCATTCCTCACAC-CCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaa-gcattcagaaataggtgaaaaatggtgacttgttagtgcttcaattacatcgaattgtgtttcttcgtttcttttccttaattggtttgccaaggtaactatgttttcttccgcaatgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 2
----ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacac-gctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag--------------------
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AGCTATCAGCACTCCCCAAA---CCCTCGTCTT-AACGAGAGGATTCTTTCATCCATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGgtaagcaataccattgtaaaattgtgacatcttaggtgttt-tgatcattatgtatttcttttttcttactttattttgtatattaactgaatttccccctgcaatgcag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 2
----ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacg---------------ctctagcttgacaa-atggtcagc-cgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag------
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GTTGAGAAACATGTTTCAC----TTCCTACTCTTAATGAGAGGATACTTTCGTCCATGAGTCACAGATCAGTAGCTGCACACCCATGGCATGATCTCGAGATAGgtaagctatacgtaaaggtttctttttcttttttttggctctaagatcatttcattgttttttagtaataactcttatacctt--ttttgcttcgcattcctttgtttacag
upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 2
-ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtat-tgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagtt---catcttggattc--atgcag
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AACTCTCATCAACACTCACACCCACCTCTT-AATGAAAGGATTCTTTCATCCATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctacttttgttgtaacgc-atgttgagttaattcttaatgtctcctttttactagtggccttttattatgacattttttatttcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33467853|gb|CF244902.1|CF244902EST: CATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAG GTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTT
genomic: CATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtaca ... attcatgcagGTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT