Sequence
atgc intronic sequence ATGC exonic sequenceTCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatatagcgctcttccatcagtatgtaggctatatatggctttgtcccttccctaccatttgggtaactgtatgattgtcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaa--gatatagcgctcttccat---cagtatgtaggctatatatggctttgtcccttccctaccatttgggt-aactgtatgattgtcttgcag----------------------------------------
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ACATGGAGTCGCGGATGGATCAGTACGAGATCATGGAGCAGGTTGGCCGGGGCGCCTTTGGTGCTGCAATCCTTGTGAATCATAAGATTGAGAGGAAGAAgtgagtggcatagttctattttattttcatctttttaacaacttgataacacttatgtttcctttcactaagatgaagagtttgattttgctgttaatattagtcaccatatatttatatatgttgtgttgcacag
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagat---atagcgctcttccatcagtatgtaggctatatatggctttgtcccttccctaccatttggg---taactgtatgattgtcttgcag-------
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--ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGCCGCGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCCGAGAAGATGAAgtgcgtttgcgtctcgattgtttgcgtttggctgagtcggtaattggattgtgtttcgtttgaattttgagaactaacggttcgtttggttcgtggattgcag
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G31330.1 (Glycine max), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatatagcgctcttccatcagtatgtaggctatatatggctttgtcccttccctacc---atttgggtaact----gtatgattgtcttgcag-------
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--ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGTGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAgtgcgtttgcgtctccatttttttgcgttt-ggttgtgtctgtatttggtttgcgtttattcaaattttgagaactaacggttcgtttggttcgtggattgcag
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatatagcgctcttc-catcagtatgtaggctatatatggctttgtcccttccctac-catt--tgggtaactgtatgattgtcttg-cag------------------------
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--ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCGGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAgtaatagtcaccactttttgtatttcattgatggggctacgtttttttgttcatgagaaattcgttgatgggtaggtttgtaagtttgatgactgaagctttgttttattgggttgcag
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G18340.1 (Glycine max), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatatagcgctcttcca---tcagtatgtaggctatatatggctttgtcccttccctac-catt--tgggtaactgtatgattgtcttgcag----------------------------
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--ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAAAAGAAgtaatagtcaccactttttgaatttcattgatggggttatgtttg--tttgttcataagaaattcgttggtgggtaggtttgtaagtttgatgatgactgaagctttgttttactggattgcag
upper sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 1
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagat-atagcgctcttccatc--agtatgtaggctatatatg-gctttgtccc----ttccctaccatttgggtaactgtatgatt-gtcttgcag
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TCATGGAGTCTCGAATGGATCAGTACGAGATCATGGAGCAGATCGGACGCGGAGCGTTCGGGGCTGCCATTCTTGTGAATCACAAATCGGAGAAGAAGAAgtatttttatgatttttttttggcgcaatctatgaatttttggtgagttttgtaatgagatggtttggttttggagtgatcgagtggttcgattttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74241296|gb|DT649210.1|DT649210EST: GGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAA GTATGTGCTGAAGAAAATCCGTCTTGCGAGGCAGACTGAGCGCTGTCGGAA
genomic: GGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatata ... tgtcttgcagGTATGTGCTGAAGAAAATCCGTCTTGCGAGGCAGACTGAGCGCTGTCGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATGGAGTCACGGATGGATCAGTACGAAATCATGGAGCAGATTGGCCGTGGGGCTTTCGGTGCCGCCATACTAGTCAATCACAAATCTGAAAAGAAGAAgtaagatatagcgctcttccatcagtatgtaggctatatatggctttgtcccttccctaccatttgggtaactgtatgattgtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG