1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTCAACCTGCAACATATACTCCAACTATAGGTTCGGAGTCGACAACTGGAACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttgaagacttgtattggttttgaatgcttatgtttttttttgttttttttggctgggtctgtcgctgatgtttatatgtgttgtcttttgtgtttgcctacctaaatcaccag
species | Zea mays |
transcript | GRMZM2G136769_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTGEST: gi|31354525|gb|CD438882.1|CD438882
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTG
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTGEST: gi|67035271|gb|CO463804.1|CO463804
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTG
EST: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATG CTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTG
genomic: AACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttg ... aaatcaccagCTGGGAGTGCACAAGGAGCAACACGGTCCAGTGGCAACACAAGAACTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAACCTGCAACATATACTCCAACTATAGGTTCGGAGTCGACAACTGGAACCCCAGCTCCAAATACTAATCCACTTCCAAATCCCTGGAGCACCAATGgtaggttttgaagacttgtattggttttgaatgcttatgtttttttttgttttttttggctgggtctgtcgctgatgtttatatgtgttgtcttttgtgtttgcctacctaaatcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA