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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGAAGATCGAAGTTGTGGAACAACCATGTAATAAGTCTACAGTTCCTCCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttgccccgaagcaagattgagcaatctggtttgtttaatgcttaatatatatatatatatatatatatatattttaaatttatagggaggaat...

Basic information

species Zea mays
transcript GRMZM2G136538_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136538_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g27760.1 (Oryza sativa), 5'ss of exon 2
TAGTGAAGATCGAAGTTGTGGAACAACCATGTAATAAGTCTACAGTTCCTCCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttgccccgaagcaagattgagcaatctggtttgtttaatgcttaatatatatatatatatatatatatatattttaaatttatagggaggaat
||||||||||||| ||||  ||||| | ||| ||||||||| || | |  | ||| |||||||| |||| ||||||||| ||||||| |||||| ||||||||||| |||  | | ||   | ||  || ||    | |  ||  || ||     || | |  ||||  || | | | | |||                 
TAGTGAAGATCGAGGTTGCAGAACAGCTATGCAATAAGTCTGCAATCCTGCATTCAGAGGTTCACTTTGTGCATTACCCACAACCGATAACTTATAGCAGgtgagagttgtgctgcagtg-gtttatgctatgctatatactt--tgattgtgtaatgtttg-atatg-atttttttttcttag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335856|gb|CO530982.1|CO530982
EST:     CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAG                         GGTCTCGTGGCGAATCACGTGGCCGTAGTGGACTACTTCAATCGAAGAGGA
genomic: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttg ... atgtttccagGGTCTCGTGGCGAATCACGTGGCCGTAGTGGACTACTTCAATCGAAGAGGA