1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGCTGCGGAAATGGTGAAGGCGGCGACGAGCGACAAGCTCAAGGAGATGGACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgccattccctcctttctgttccctccctccccctgtttttcacccttcggaaccactggttaccgagtagcattgcaacttcgctggctgaa...
species | Zea mays |
transcript | GRMZM2G135568_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|211033698|gb|FL002059.1|FL002059
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCNAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTEST: gi|211036134|gb|FL002061.1|FL002061
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGT
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|149083911|gb|EE173287.2|EE173287
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|211036133|gb|FL002060.1|FL002060
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCBGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|71757754|gb|DR955691.1|DR955691
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|211033697|gb|FL002058.1|FL002058
genomic: GAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAASTCTGTAGGGAGCAAGAAEST: gi|149061139|gb|EE157399.2|EE157399
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|149061138|gb|EE157398.2|EE157398
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: AGCTCGTGGCGCAGGATCCGGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAEST: gi|211036135|gb|FL002062.1|FL002062
genomic: AGCTCGTGGCGCAGGATCC-GGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAAEST: gi|71757755|gb|DR955692.1|DR955692
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
EST: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGG GAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
genomic: GACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgc ... ctgtcaccagGAATGCGAAGGATGTGATCAAGTCTATAAAGAAGTCTGTAGGGAGCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGCGGAAATGGTGAAGGCGGCGACGAGCGACAAGCTCAAGGAGATGGACTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCGGGgtatgcttgccattccctcctttctgttccctccctccccctgtttttcacccttcggaaccactggttaccgagtagcattgcaacttcgctggctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC