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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaagc...

Basic information

species Zea mays
transcript GRMZM2G135461_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135461_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaagc
||  |||| |||| || |||  |||| || || |||||||||||||| |||||||| |||||  | || || || ||||| ||||||||||| |||||||||| ||||       |||        |||||  |       |  | |||    |||| | |  ||    || ||   |   | ||              
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtaggatcttgtttccaaat-------tttttccat------ggattaagtgccatttgtctcaattgagctgttatgtgatgtcag-------------

upper sequence: GRMZM2G135461_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctag--gcattggtgggagaagc-----
  ||| || || | ||  ||  | ||||| || |||||||||||||||||  |||| |||||  |||| || ||||| |||||||| ||||| ||||| |  ||    ||  | |  |   |||| |    | |  ||| | | | |   |   |  ||     | ||  |||||  | ||   | |  | | | |   ||     
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgt----cattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct