1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccggttactttgttctaaatcattggtatgcccattgctccgcttgatttttgttgatctcgtgttctcggcatcggcggcag
species | Zea mays |
transcript | GRMZM2G135283_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286141|gb|FL173722.1|FL173722
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379736|gb|FL173736.1|FL173736
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379741|gb|FL173741.1|FL173741
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|21987802|gb|BQ779330.1|BQ779330
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211284346|gb|FL173719.1|FL173719
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|149078907|gb|EE167727.2|EE167727
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211382375|gb|FL173752.1|FL173752
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCMTTCMGGCGAC-GAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379738|gb|FL173738.1|FL173738
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379739|gb|FL173739.1|FL173739
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286153|gb|FL173734.1|FL173734
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379748|gb|FL173748.1|FL173748
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286143|gb|FL173724.1|FL173724
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148973319|gb|EE024404.2|EE024404
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|149012532|gb|EE042603.2|EE042603
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379742|gb|FL173742.1|FL173742
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|89761747|gb|DY689638.1|DY689638
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAAAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148946029|gb|EC891328.2|EC891328
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|149048905|gb|EE048404.2|EE048404
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379749|gb|FL173749.1|FL173749
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286154|gb|FL173735.1|FL173735
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148958252|gb|EC904466.2|EC904466
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379740|gb|FL173740.1|FL173740
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCTCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379747|gb|FL173747.1|FL173747
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379745|gb|FL173745.1|FL173745
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379746|gb|FL173746.1|FL173746
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286148|gb|FL173729.1|FL173729
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|71299012|gb|DR785498.1|DR785498
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148930308|gb|EE284699.2|EE284699
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379743|gb|FL173743.1|FL173743
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148969981|gb|EE020895.2|EE020895
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286151|gb|FL173732.1|FL173732
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211284347|gb|FL173720.1|FL173720
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286145|gb|FL173726.1|FL173726
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC TGGACTAAGCAGTCGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211382374|gb|FL173751.1|FL173751
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|149081312|gb|EE170425.2|EE170425
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379744|gb|FL173744.1|FL173744
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148947246|gb|EC892606.2|EC892606
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379750|gb|FL173750.1|FL173750
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211379737|gb|FL173737.1|FL173737
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|149089957|gb|EE179246.2|EE179246
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|148945831|gb|EC891120.2|EC891120
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTEST: gi|211286140|gb|FL173721.1|FL173721
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
EST: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC TGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
genomic: GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccg ... tcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACCgtatgtcccggttactttgttctaaatcattggtatgcccattgctccgcttgatttttgttgatctcgtgttctcggcatcggcggcag
- - - - - - - - GGAGGA
- - - - - - - - - GAGGAG
- - - - - - - - - AGGAGA
- - - - - - - - - - - GAGATC