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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccag

Basic information

species Zea mays
transcript GRMZM2G134930_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134930_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 5'ss of exon 2
TCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccag
|||| ||||| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| | | |          |   |  | ||  |       | || |||||  | |  |   | |  |        | | ||||      | || | | |    || |||
TCCTGTTCCTGCTGGGCCTCAGCTTCACCAACGCCTCCTACGCCGCAGCCTTCCAGCCAGCCATACCGGTGTTCACATTCCTCCTAGCCGCAATCGTCGGgtaaaattgg----------ttcatgatttggaaaattatctact-cctgatgttg--cattggcttcaaatttcaactgaattgagtgaaattacgcgt---gttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18383709|gb|BM416909.1|BM416909
EST:     TTCCAGCCGGCGATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG                         CGTCGAGGTGATCAACATCTTCNCGAAACATGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG