1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACGTGCGGCGCCCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttccagccatctttcacttttttttttggttcctaatctttcactgtgtaaatctacatatagtttccatcaccactaacccttgctggaggaactaatgaaacggctttctcctcctaccttgcctgccgcag
species | Zea mays |
transcript | GRMZM2G134930_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCCCTGG GATCTTTCGG-AACCAGCTCCCTCTTEST: gi|71434594|gb|DR815644.1|DR815644
genomic: C-GGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTT-CGGGAACCAGCTCC-TCTT
EST: CGGTGACTCCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCCGGCTCCTCTTCCTCCTGGGGCCTCGGEST: gi|18384215|gb|BM417414.1|BM417414
genomic: CGGTGACTCC-TCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAG-CTCCTCTTCCTCCTGGG-CCTCGG
EST: CCGGTGACGCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCEST: gi|94476183|gb|EB705141.1|EB705141
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|88758283|gb|DY542424.1|DY542424
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|148951696|gb|EC897448.2|EC897448
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|149058751|gb|EE156769.2|EE156769
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|78106564|gb|DV524982.1|DV524982
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|89762148|gb|DY689879.1|DY689879
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|148971932|gb|EE022716.2|EE022716
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|148966599|gb|EE017634.2|EE017634
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|78114582|gb|DV532970.1|DV532970
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|87153844|gb|DY398633.1|DY398633
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACGCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCEST: gi|149101866|gb|EE287429.2|EE287429
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACGTGCGGCGCCCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttccagccatctttcacttttttttttggttcctaatctttcactgtgtaaatctacatatagtttccatcaccactaacccttgctggaggaactaatgaaacggctttctcctcctaccttgcctgccgcag
- - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC