1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTGCGACGGAACTGCTCGAGATAAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgccgccacgcttatagtcgaagcaagggagaggattggtaatgttcatgcactcttgaatgaaactagtttctgttctgttctgtag
species | Zea mays |
transcript | GRMZM2G133959_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGEST: gi|76290047|gb|DV029615.1|DV029615
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGEST: gi|76015724|gb|DT942894.1|DT942894
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGEST: gi|71431549|gb|DR812599.1|DR812599
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGEST: gi|50336059|gb|CO531185.1|CO531185
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCEST: gi|89764029|gb|DY690985.1|DY690985
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACC
EST: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAG GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
genomic: AAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgc ... tgttctgtagGCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCGACGGAACTGCTCGAGATAAGGTCCAAAGAGCCGTCCCTCCACGTGCTGCTTATTGCTGGGAACCCAGgtccgtgtgccgccacgcttatagtcgaagcaagggagaggattggtaatgttcatgcactcttgaatgaaactagtttctgttctgttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT