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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatgtgttctgggaaaatctatggcgtgcatgcttcatgcacttttctggatggagtatctgaaagtttcatgtctgtgttccatgatttttta...

Basic information

species Zea mays
transcript GRMZM2G133226_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 2
TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactg--gatgtgttctgggaaaatctatggcgtgcatgcttcatgcacttttctggatgga-gtatctgaaagtttcatgtctgtgttccatgatttttta
|||||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| || ||||||||||||||    ||||   || |||    || |||   |  ||  |       | |  ||       ||   | | |  || |    ||  |  | || || |   
TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCTGTGCAAATGTCATTACGCTCCTTCAGgtacttctcatgtccccttggatggactctggaaagtctggctttgctgttatgttgtgcaagtgtgcattacacatttacacatgaataacttgcttgt---

upper sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G25900.1 (Glycine max), 5'ss of exon 1
TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgta--------ctggatgtgttctgggaaaatcta-tggcgtgcatgcttcatgc----acttttctggatggagtatctgaaagtttcatgtctgtgttccatgatttttta--
|  |  | || ||||| ||||||||||| ||||| || || |||||||| | ||| ||||||||||||||   |||||||         |  |  || | |   |  ||||  | | |   |||||| |       | ||||||  |  |    |    | | |  |    | |||| |||| |  |||   
TTCTCTTGGTCATGTTCAACAAAGCAGCCCTCTCCTCTTACAATTTCCCATTTGCAAATGTCATCACACTTGCTCAGgtagttcttttttcaagatgattttttactatctcctagagctaatgcttaaaattaatatttttctcaaaagttgcttatcatgctgaaaagttatgtttcatgttggtttcag

upper sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 2
TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatgtgttctgggaaaatctatggcgtgcatgc---ttcatgcacttttctggatggagtatctgaaagtttcatgtct-gtgttccatgatttttta--
|  |  | ||||| || ||||||||||| || ||||| ||| ||||||||||||| | ||||||||||||| ||||||||   |||   | ||||  |  | | |    | | ||    |  ||   ||| | |       || | |||   |||||   ||  ||   | | | ||   |  
TTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgta---gat---tcctggccatcttttttcttttcttggcaatcaattgccttatataatcaaggtgtttgattttttcactcctcatgcaactttaattgaaaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148947034|gb|EC892331.2|EC892331
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         ATGGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACAT
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgtgccgtttA-GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACAT
EST: gi|91054599|gb|EB165017.1|EB165017
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         -G-TTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgtgccgtttAGGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG