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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcag

Basic information

species Zea mays
transcript GRMZM2G131998_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131998_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g53530.1 (Oryza sativa), 5'ss of exon 2
CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcag
||||||  || ||||  |  || ||| |||| || || |||||||||||||| ||||| ||||| |||||||||||||| ||| | ||||| | ||| ||||||| |||        | ||   | ||||  ||||  | ||  ||| |  |   || |    |||  || | |      |||| || |  || ||| ||  || ||| |   ||| |                                                
CTATCTCGTTTAGTGCAAACGGTGCTCTGTTCGCATCCGCTGGTGATGACAAGCTTGTTAAGGTCTGGAAGACTGATTCATGGTGCTGCATTCGGACCATgtaagtcac--------cctg---tttgttttattgtga-aagcataatgga---ttaaccaaatt--agtgtaccattttatttatcatgta-ttcagtgagtcaatctacaactat------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091377|gb|DV519751.1|DV519751
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051623|gb|FL294342.1|FL294342
EST:     AAACTTGTGAAGGGTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAAGAGG-TCAGTGCAGTTGTTTAT-AGCCACGATG
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAA-GAGGGTCAGTGCAGTTGTT-ATTAGCAACGATG
EST: gi|211048677|gb|FL294338.1|FL294338
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGACGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|87156923|gb|DY401712.1|DY401712
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048668|gb|FL294329.1|FL294329
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAARAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048667|gb|FL294328.1|FL294328
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGAC-TGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|89761079|gb|DY689237.1|DY689237
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|89249366|gb|DY621152.1|DY621152
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051635|gb|FL294354.1|FL294354
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|148936297|gb|EC880380.2|EC880380
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051632|gb|FL294351.1|FL294351
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|71437750|gb|DR818800.1|DR818800
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|148959295|gb|EE010708.2|EE010708
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051631|gb|FL294350.1|FL294350
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048669|gb|FL294330.1|FL294330
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAG
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAG
EST: gi|211048680|gb|FL294341.1|FL294341
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|22546288|gb|BU098599.1|BU098599
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|4753448|gb|AI657358.1|AI657358
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|148945698|gb|EC890971.2|EC890971
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|148973467|gb|EE024565.2|EE024565
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|149081963|gb|EE171128.2|EE171128
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051633|gb|FL294352.1|FL294352
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGACGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048671|gb|FL294332.1|FL294332
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211051625|gb|FL294344.1|FL294344
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|78106892|gb|DV525310.1|DV525310
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048673|gb|FL294334.1|FL294334
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTA
EST: gi|26558708|gb|CA830943.1|CA830943
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048679|gb|FL294340.1|FL294340
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|78081795|gb|DV510207.1|DV510207
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|20811129|gb|BQ295607.1|BQ295607
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|149111910|gb|EE191066.2|EE191066
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|89759711|gb|DY688443.1|DY688443
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|211048676|gb|FL294337.1|FL294337
EST:     AAACTTGTGAAGTTTTGAAAGACTGATTCGTGNCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTAATAACCACGATGACCTG
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTG
EST: gi|148964964|gb|EE015811.2|EE015811
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|76017216|gb|DT944386.1|DT944386
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|50331437|gb|CO526563.1|CO526563
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: gi|71771570|gb|DR969507.1|DR969507
EST:     AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT                         AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 36 (downstream exon)
Score: 47

CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 62

CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 72

CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG


Block sizes: 47 (upstream exon), 43 (downstream exon)
Score: 45

CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATCTGCTTCAGTGTGAGTGGAGCTTTGTTTGCTTCAGCTGGTGATGACAAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA