Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag

Basic information

species Zea mays
transcript GRMZM2G130987_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattct-aatcgtagcat-ttctctatca-agtctgccata-gtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag-------------------------------------------
|||| |||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |     ||| | ||| ||  | | | |||| |  ||   | || | |||    || | ||  |  ||||||  |  ||||   |  |   ||| |     |   || |   |   |  |   | | |  |      | |||||   |                                           
GTATCACTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtattatgagattaacactat-gttctttactattacctgaaccttgaaacttagtgccttatttactatggtctgctgtttgtagcccaccatatttcag-cgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccag

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || || || |||||||| |||||  |||||||||||||| | |  |||||||||||||||||||| ||||||| |||  | ||||||||||| ||  ||||||| |     ||     |   |  | || |||  ||   |||  | |  |   |   || || |  ||| ||  |  |    |||| ||   ||  |    |||  ||                                          
GAATCACCCCTATTGTGACATCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTTgtaagtatctctatttctgtatcttatttattttc--ttggtacatgttt--ttacatttttccttttgcaattc--ctgt----gattttag--ctgtttgcttgtggttg-----------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtc-tgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || || || |||||||| |||||  |||||||||||||| | |  |||||||||||||||||||| ||||||| ||| || ||||||||||||||  ||||||| |  |  ||     |   |  | || |||  ||   |||  | |  |   |   || || |  ||| || ||  ||  ||| |  |     || ||                                                    
GAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTgtaagtatctttatttctgtatcttattaattttc--ttggtacatgtgtt-ttacacttttccttttgcaattcctgtgattttagctggttgcttttgtgg---------------------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgt-tgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || ||||| |||||||| |||||  | |||||||||||||| |  || || |||||||||||||| ||||||| |||  |||||||||| || ||| |||| |||  | ||||| ||   |||||      ||   | | || | || |          ||||||| || | | |    ||   |||| |  |  |   |   |  ||||||                                        
GAATCACTCCGATTGTGACTTCTGGGCTAGTAATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGAGAGGATCGAGCCCTGTTgtatgtgcctttctttgtacttatatt---ccttttgctgaacatatttttt---------tttctctgtctaatat----tatctgattttgcatttgtggccatcaatttaact--------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgt-tgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || ||||| |||||||| |||||  | |||||||||||||| |  || || |||||||||||||| ||||||| |||  |||||||||| || ||| ||||||||| | ||||| ||   |||||    |||  |  |||     ||||   |||   ||||   |  ||  | ||      |  ||| |||   | |  |                                                   
GAATCACTCCCATTGTGACTTCTGGGCTAGTAATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGAGAGGATCGAGCCCTGTTgtaagtgtctttctttgtacctatattcctttctgaacatattttttttct--ccgtctaattttatttgca--tttgtggccatcaatt-taactgtgcaaaat-------------------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv00s2574g00010.t01 (Vitis vinifera), 5'ss of exon 1
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaat--attgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || || ||||||||||| |||||  |||| ||||||||  | |  || || ||||| |||||||| ||||||| |||| | ||||||||||||||  ||||||| |  | |     ||  |  |||  | | ||   |     ||  | | ||     ||||||| | |    | ||  ||       ||| |  || |    ||  ||                                            
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCTGGGTCAAAGATTATTGAAGTGGACAACAATGTGCGTGAGGATCGTGCTCTCTTgtaagtatcctttaggctaagttctatttgggtttttggt-----cagatgtgat----acatttct-tgtactatttgtgattcagatatattattctccctg-ctacat--------------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 1
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaat--attgtgatcttcaattatcacaattctaatcgtagcatttctc-tatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
| || || ||||||||||| |||||  |||| ||||||||  | |  || || ||||| |||||||| ||||||| |||| | ||||||||||||||  ||||||| |  | |     ||  |  |||  | | ||   |     ||  | | ||     |||||||  ||  |  | ||    || ||||  ||  |   ||| |   |                                              
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCTGGGTCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTTgtaagtatcctttaggctaagttctatttgggtttttggt-----cagatgtgat----acatttcttgtactatttgtgattcag-agatattattctccctgctacat----------------------------------------------

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 1
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 2
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtg-ttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag
|||| || || ||||| || || ||  | || ||||||||| | |  ||||||||| ||||||| |||||||||||||| || |||||  | || ||  |||||||| || | | |   |     |||   ||||  |    |    | ||| | |||     || || |      | |||| | || ||||     ||     |   |                                             
GTATCACACCCATTGTTACGTCAGGGCTCGTTATGCAACTTTTGGCTGGATCGAAGCTCATTGAGGTTGACAACAGTGTTAGGGAGGACAGAGCCCTCTTgtaagtgattatgtcttccat----ttgaactctttgaaatacttcttgctatttgta---catccctgttggtgttcccattg-agcttat-----tttgagaccacaccag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361484|gb|CD445841.1|CD445841
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|26456843|gb|CA828426.1|CA828426
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|32934318|gb|CF039130.1|CF039130
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|33091773|gb|CF051767.1|CF051767
EST:     AGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: AGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211074844|gb|FK968210.1|FK968210
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACA
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACA
EST: gi|211074839|gb|FK968205.1|FK968205
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|20300676|gb|BQ163619.1|BQ163619
EST:     GGATCGTGCTCTGCT                         GAATGG-GCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: GGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|22490947|gb|BU050870.1|BU050870
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|6021529|gb|AW066457.1|AW066457
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149111354|gb|EE294857.2|EE294857
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|44681773|gb|CK786821.1|CK786821
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|15198869|gb|BI423525.1|BI423525
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31350934|gb|CD435291.1|CD435291
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211074842|gb|FK968208.1|FK968208
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31359604|gb|CD443961.1|CD443961
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31351103|gb|CD435460.1|CD435460
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67035315|gb|CO463848.1|CO463848
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149008958|gb|EE041174.2|EE041174
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67037304|gb|CO464154.1|CO464154
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67029660|gb|CO458409.1|CO458409
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67035173|gb|CO463706.1|CO463706
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67042883|gb|CO469138.1|CO469138
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149109194|gb|EE190067.2|EE190067
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148953634|gb|EC898991.2|EC898991
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148939934|gb|EC884655.2|EC884655
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31356382|gb|CD440739.1|CD440739
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|32914742|gb|CF019554.1|CF019554
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31360149|gb|CD444506.1|CD444506
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGAGCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148936308|gb|EC880390.2|EC880390
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149113040|gb|EE295813.2|EE295813
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|47961762|gb|CN844471.1|CN844471
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|19436291|gb|BM952701.1|BM952701
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31353192|gb|CD437549.1|CD437549
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|116822305|gb|EC865696.1|EC865696
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31360614|gb|CD444971.1|CD444971
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148932797|gb|EE285481.2|EE285481
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211072106|gb|FK968195.1|FK968195
EST:     CGAAGATCATTGAAGTTGACAACAGTGTGANGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: CGAAGATCATTGAAGTTGACAACAGTGTGA-GAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31356381|gb|CD440738.1|CD440738
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211072113|gb|FK968202.1|FK968202
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTACTCCAATTGTGACCTCTGGTATGGTAATGCAACTTCTTGTCGGATCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT