1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACAGATCGACTCTTACCTGCTTGGGATACAACATCTGGCATCCCTTATAATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttactgctattctgtatttccactgagtaaccacttatatttcaaataccttcttaaacatactgtagttcacaaggtgtgctgatactaacctt...
species | Zea mays |
transcript | GRMZM2G130889_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCCATAATCTCTGCATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCTEST: gi|60349712|gb|DN216685.1|DN216685
genomic: AGCCCATAATC-CTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCT
EST: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCTEST: gi|22543150|gb|BU093588.1|BU093588
genomic: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCT
EST: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCTEST: gi|22935539|gb|BU571814.1|BU571814
genomic: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCT
EST: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCTEST: gi|60342116|gb|DN209089.1|DN209089
genomic: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCT
EST: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCTEST: gi|32928872|gb|CF033684.1|CF033684
genomic: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTACGGAGCAACTTGAATTCATAGCT
EST: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAAC GGTGATAGTATCCTTGCAGATTCTGGTA
genomic: ATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttact ... ccatctgcagGGTGATAGTATCCTTGCAGATTCTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGATCGACTCTTACCTGCTTGGGATACAACATCTGGCATCCCTTATAATAGAATAAACCTAGCTCATGGACGAGCCCATAATCCTGGATGGACTAACgtgagttactgctattctgtatttccactgagtaaccacttatatttcaaataccttcttaaacatactgtagttcacaaggtgtgctgatactaacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA