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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTGgtatgctgtgtatttcttttgcttgtatgagtagatattttactgaattcctacaattgttgactctgctctccctcttatcag

Basic information

species Zea mays
transcript GRMZM2G129288_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129288_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g36190.1 (Oryza sativa), 5'ss of exon 3
CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTGgtatgctgtgtatttcttttgcttgtatgagtagatatttta-ctgaattcctacaattgt-tgactctgctctccctctta-tcag-------------
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CCTGGCCCTCGAGATGGAATGATTCAATGTTTCATAAAGCGGGATAAATCTAAATCAACTTATCATCTCTACTTGTGCCTGAGTACTGgtatgtcttgtgcttctttcactcatacgaccagattttttttcttaatttggttaacagtattgcaaggctttatcttttggttaaacatctactacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426772|gb|DR807822.1|DR807822
EST:     GCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTG                         CTGTGCTCATGGAGAACGGCAAGTTCCTCTTATCAGCTAAAAGGAGCCGCA
genomic: GCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTGgtatgctgtg ... ctcttatcagCTGTGCTCATGGAGAACGGCAAGTTCCTCTTATCAGCTAAAAGGAGCCGCA
EST: gi|149111284|gb|EE294782.2|EE294782
EST:     GCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTG                         CTGTGCTCATGGAGAACGGCAAGTTCCTCTTATCAGCTAAAAGGAGCCGCA
genomic: GCGCGATAAATCCAAGTCCACGTATCGTCTCTACTTGTGCCTGAGTACTGgtatgctgtg ... ctcttatcagCTGTGCTCATGGAGAACGGCAAGTTCCTCTTATCAGCTAAAAGGAGCCGCA