Skip to another splice site:
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcag

Basic information

species Zea mays
transcript GRMZM2G128995_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcag
||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||  |||     |||||  || | |||||||  ||  | |  |||  | | |    |||| |  |  | || |  | |   || | ||   || |         
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaaccc-----atctct-tctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcc-tattattcctgccgctgc-tgcag--------

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 2
TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgat-ctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgt-atacccgcag--------------------------------------------------------------
|||||  ||||  ||||||| ||||| ||||| ||||| |||||| | ||||| ||||| |||||||||||    || || || | | ||| |          | || |     ||  ||  |  | |   |||  |    || | |  |   | |   |||||  |  | |||                                                               
TTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGgta---cgtacaattcccaatcacacgaaaaacattcaccgttttcgttgcgatc-cttgatattgtggaaaattgcggataaatgtggttatgttgtggctgcaattgcgccttgtttgtttattggtttcattttgcttgatctgtttgtgtgtgtgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217327|gb|FL397497.1|FL397497
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211240466|gb|FL378083.1|FL378083
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211131976|gb|FL391859.1|FL391859
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211526764|gb|FL372694.1|FL372694
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211031812|gb|FL374016.1|FL374016
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211034476|gb|FL382040.1|FL382040
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211478907|gb|FL382317.1|FL382317
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211331894|gb|FL371096.1|FL371096
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGATGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211136925|gb|FL422189.1|FL422189
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211045930|gb|FL419466.1|FL419466
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211196623|gb|FL384762.1|FL384762
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211377201|gb|FL412470.1|FL412470
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCG
EST: gi|211350528|gb|FL378240.1|FL378240
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|87153287|gb|DY398076.1|DY398076
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211520923|gb|FL381010.1|FL381010
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|31363830|gb|CD448185.1|CD448185
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211441636|gb|FL403705.1|FL403705
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211023088|gb|FL427788.1|FL427788
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|71427970|gb|DR809020.1|DR809020
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211042213|gb|FL387605.1|FL387605
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|148954149|gb|EC899548.2|EC899548
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211327966|gb|FL399630.1|FL399630
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211539519|gb|FL409049.1|FL409049
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGYCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|31348626|gb|CD432983.1|CD432983
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCTAT
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211532950|gb|FL381081.1|FL381081
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211065673|gb|FL393994.1|FL393994
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|19351525|gb|BM896057.1|BM896057
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211363177|gb|FL385284.1|FL385284
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211493010|gb|FL369795.1|FL369795
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|67032136|gb|CO460885.1|CO460885
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211317751|gb|FL419307.1|FL419307
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211363428|gb|FL397063.1|FL397063
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|148968978|gb|EE019672.2|EE019672
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211452191|gb|FL398498.1|FL398498
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211247493|gb|FL399189.1|FL399189
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAA
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAA
EST: gi|211452273|gb|FL403779.1|FL403779
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211504705|gb|FL413781.1|FL413781
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGANCTCGTCWAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCMGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|67018576|gb|CO447325.1|CO447325
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|149010225|gb|EE042044.2|EE042044
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211413494|gb|FL407160.1|FL407160
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211288089|gb|FL387847.1|FL387847
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|149000734|gb|EE037952.2|EE037952
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211352988|gb|FL379679.1|FL379679
EST:     GCGTCGTCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|149098811|gb|EE184822.2|EE184822
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211206907|gb|FL385660.1|FL385660
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|15312764|gb|BI478361.1|BI478361
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211057980|gb|FL426570.1|FL426570
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211169417|gb|FL381630.1|FL381630
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGA
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATG-TCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGA
EST: gi|211212618|gb|FL412314.1|FL412314
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGMG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|148963815|gb|EE014912.2|EE014912
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|6095541|gb|AW120208.1|AW120208
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211264685|gb|FL426671.1|FL426671
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211301307|gb|FL411052.1|FL411052
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211319940|gb|FL427662.1|FL427662
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211461106|gb|FL380550.1|FL380550
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|78076482|gb|DV504916.1|DV504916
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211141724|gb|FL403003.1|FL403003
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211017234|gb|FL404253.1|FL404253
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211003766|gb|FL418085.1|FL418085
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211229673|gb|FL386151.1|FL386151
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211202638|gb|FL424402.1|FL424402
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcag

- - - - - - - - - - - - - - - - - - -  CTCCTC