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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtatttctttttgacatattttcaacactaattttggcggcatcgtcatgaaagaatccttttatttatatacgaaattacag

Basic information

species Zea mays
transcript GRMZM2G128877_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 18
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 18
GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtatttct----ttttgacatattttcaacactaattttggcggcatcgtcatgaaagaatccttttatttatatacgaaattacag
|| |||||||||||||||||| ||||||| || ||||| |||||| |||||||||| || ||  ||||||||||||| || ||||||||||| | ||||||    | ||  ||  |||  ||||||   | ||  |    |   ||||   |     ||| ||  |   |  |       
GCGGTGGAGCGGGCAGCTGGTGCTGATGGACAGAAGATTACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTgtacgcatttctaccctattttcaagtttctaacactcgctgtgtagattgcaatatgaccaatggtatttgttgcttgtcacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67018748|gb|CO447497.1|CO447497
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|6827260|gb|AW330903.1|AW330903
EST:     GTTTGGGCGATCT-TTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGGTCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: GTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|60291764|gb|DN190003.1|DN190003
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|5871663|gb|AW018134.1|AW018134
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|4630580|gb|AI621454.1|AI621454
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32833833|gb|CD973511.1|CD973511
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|5770168|gb|AI973342.1|AI973342
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|33103191|gb|CF063151.1|CF063151
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|5804554|gb|AI979524.1|AI979524
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|33103198|gb|CF063158.1|CF063158
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|4646572|gb|AI491316.2|AI491316
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|4572998|gb|AI586647.1|AI586647
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|33101606|gb|CF061566.1|CF061566
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|33095505|gb|CF055499.1|CF055499
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCCAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32929306|gb|CF034118.1|CF034118
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|67018094|gb|CO446843.1|CO446843
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32835087|gb|CD974765.1|CD974765
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32928630|gb|CF033442.1|CF033442
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32846470|gb|CD986151.1|CD986151
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGC                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|61236472|gb|DN586224.1|DN586224
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: gi|32940788|gb|CF045607.1|CF045607
EST:     ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT                         ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA