1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCTTGCGGACGGCGACGACGTGGTGGCCCTTACCGAATCCACGTTCGAGAAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctcgctccctttgttctctaccacgctggattgtatttcgatagatcgtacgggaatgcgggactagatctgtggactgtggttggggttact...
species | Zea mays |
transcript | GRMZM2G128171_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249326|gb|FL145204.1|FL145204
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249337|gb|FL145215.1|FL145215
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTA--AA-GACTTGGTGCAAGEST: gi|211251557|gb|FL145220.1|FL145220
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211242633|gb|FL145173.1|FL145173
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|32805924|gb|CD958158.1|CD958158
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211247093|gb|FL145191.1|FL145191
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211242629|gb|FL145169.1|FL145169
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGRTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211244865|gb|FL145185.1|FL145185
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211244868|gb|FL145188.1|FL145188
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|78117464|gb|DV535851.1|DV535851
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211247094|gb|FL145192.1|FL145192
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGARAGACTTNGTGCAAGEST: gi|211244858|gb|FL145178.1|FL145178
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211247098|gb|FL145196.1|FL145196
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249327|gb|FL145205.1|FL145205
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAARAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211247101|gb|FL145199.1|FL145199
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211242628|gb|FL145168.1|FL145168
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249329|gb|FL145207.1|FL145207
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249334|gb|FL145212.1|FL145212
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211247099|gb|FL145197.1|FL145197
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211251558|gb|FL145221.1|FL145221
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAGEST: gi|211249328|gb|FL145206.1|FL145206
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTTGCGGACGGCGACGACGTGGTGGCCCTTACCGAATCCACGTTCGAGAAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctcgctccctttgttctctaccacgctggattgtatttcgatagatcgtacgggaatgcgggactagatctgtggactgtggttggggttact
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctccc