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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAGATCGGCGTCGGCTCGCCGCAGCATAAGTTCACTGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTTGgtgcgtcttggttcctccccttgcctggccgaggttttccttttttaggacttggatgtgttttgtgctaagactggaatgtgcttttgtgctgatgtgatgcag

Basic information

species Zea mays
transcript GRMZM2G128025_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128025_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S93_73V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCATAAGTTCACTGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTTGgtgcgtcttggttcctccccttgcctggccgaggttttccttttttaggacttgg-atgtgttttgtgctaa-gactggaatgtgcttttgt-gctgatgtgatgcag
 || ||||||||  | || ||||| |  ||    ||| ||||||||||||||||||| || ||||| |||||||| |||||  ||||||||||||| | ||||||| |         || | |  |||       || |    || ||    |||    |  ||  |||    |  ||   |  |     || ||||||    ||   
CGGAGAGATCGGAATAGGGTCGCCTCCCCAGCCCTTCGCTGTCATCTTCGACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttc-------tccttgggatggttattaattcctgggttcagttggtggcgcatcattcatgccgctgtttgtggtcagaaaccgtagctgatcatgtgtc-

upper sequence: GRMZM2G128025_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S113_31V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGGGAGATCGGCGTCGGCTCGCCGCAGCATAAGTTCACTGTCATCTTCGACACCGGCAGTTCCAACCTCTGGGTGCCGTCCTCCAAGTGCTACTTCTTGgtgcgtcttggttcctccccttgcctggccgaggttttccttttttaggacttggatgtgttttgtgctaagactggaatgtgcttttgtgctgatgtgatgcag-
 || ||||||||| | || ||||| |  ||    ||  | ||||| || |||||||| || |||||||||||||| || ||  ||||||||||||| | ||||||| |   |   |    |||  | |    |||| ||    ||  |||||  | |   ||  || |||    |||  |  |  | |   |    |  | |  | 
CGGAGAGATCGGCATTGGGTCGCCTCCTCAGCCTTTTTCCGTCATTTTTGACACCGGGAGCTCCAACCTCTGGGTCCCCTCTGCCAAGTGCTACTTGTCGgtgcgtttc--taattgtggttgttttgt--gggttgtctcgatt--ggactgagctactttaggtactagttgtggctttcgtgtgtaatcctgggaaagggggt