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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTGGAGGTTCTCTAGATCAAAAAGCAAGCAACGGGAACACCGGAATATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatcgtatattcctatactttttttagataatggaaaaaaacaatctggctccgtcactctactagttttgacatattttgctaccttttttaaaaaaaacattaaaatgaaatgcttgatttcag

Basic information

species Zea mays
transcript GRMZM2G127739_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127739_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g40190.1 (Oryza sativa), 5'ss of exon 2
AAATGTTGGAGGTTCTCTAGATCAAAAAGCAAGCAACGGGAACACCGGAATATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatcgtatattcctatactttttttagataatggaaaaaaacaatctggctccgtcactctactagttttgacatattttgctaccttttttaaaaaaaacattaaaatgaaatgcttgatttcag
||||||||||||  ||||||||||||| || |||||||||||||| || || ||||| || || || |||||||| |||||||| |||||||||||||||||| | |    |||| |  ||     ||||    ||||  |         | |  |||   |  | |||   |||                                                         
AAATGTTGGAGGCGCTCTAGATCAAAAGGCCAGCAACGGGAACACTGGGATCTTGATAAACGGCCGCGAGATTACGAAATCTGAGCTGCAAATGCTTAAGgtttgaagcaatatactggtacctaatttt---gtaattcatg----tgttttatctctaaccttttac--atttcag------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436713|gb|DR817763.1|DR817763
EST:     TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAG                         TTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT
genomic: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatc ... ttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT