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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttcttatgcttcaatcatcatccccatataaagaaaagctttagctaaaatgatgccatg...

Basic information

species Zea mays
transcript GRMZM2G127134_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g12740.1 (Oryza sativa), 5'ss of exon 2
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttcttatgcttcaatcatcatccccatataaa-gaaaagcttta-gctaaaatgatgccatg---
 ||||||||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||||   |||| | ||   | |||      |  ||| ||  |||| |  || |     ||   | ||| ||  || |  |||||  |  | |||   |  |    
TGGCACCGTCTTCCTCCTCTCCCTCCTCGGTGGCTTCCTCTCCGACTCCTACCTCGGAAGCTTCTGGACCATGCTCATCTTCGGCTTCGTCGAGCTCTCCgtaa---gaaattgattcatccatccttcatcgtcgatc--tcttctctttgatatcgcactacgataaaattgacattctttacacctagatgcaactttttgg

upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G00550.1 (Glycine max), 5'ss of exon 2
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttcttatgcttcaat-catcatccccatataaagaaaagctttagctaaaatgatgccatg------------
 || ||| |||| ||| |||| ||||| || ||||  || || ||||| ||||| ||||||||||||||||||||| ||||||| |||||||| || || ||||    || ||  |   |   | |   || |   |  ||   |||   |  ||  ||  |  ||||  | | || ||| |||  | |  | ||   ||             
TGGGACCATCTTTCTCCTCTCTCTCCTCGGCGGCTATCTATCAGACTCTTACCTTGGCAGCTTCTGGACCATGCTCCTCTTTGGTTTCGTCGAACTTTCTgtaatt--aagcttctctctctctct---ctctctctctctctatatatatatatatatattgtccattgatacaagagccttaattcatgt-atataataatacgattacag

upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G40250.1 (Glycine max), 5'ss of exon 2
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttcttatgcttcaatcatcatccccatataaagaaaagctttagctaaaatgatgccatg
 || ||| |||| ||| || ||||||| || ||||  || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| || || || |||            |  ||  |   |  |||||  ||  |  | |   || |  || | | | || ||| | | |    | |  ||  ||| |  ||  
TGGGACCATCTTTCTCCTCGCCCTCCTCGGCGGCTATCTTTCCGACTCTTACCTCGGCAGCTTCTGGACCATGCTCATCTTTGGTTTCGTTGAACTTTCCgtactc-----tctctttttctactcattctattactttttattcactatttagacagccttcacacatatatatacaaataa--tattatgtttacag-

upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv12s0035g01820.t01 (Vitis vinifera), 5'ss of exon 2
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaa--caggaaactaataattgcatataaactattcgttccttcttatgcttcaatcatcatccccatataaagaaaagctttagctaaaatgatgccatg
 || || ||||||||| || |||| |||||||||| | |||| || || || || || || ||||||||||||||||||||||| || || |||||||| ||||  |      || || ||  | | |       ||  ||  ||||    |    |  |  ||  ||  |   |     || |  |    |   |      
AGGGACTGTCTTCCTCCTCGCCCTTCTTGGTGGCTGCATCTCTGATTCTTATCTTGGGAGTTTCTGGACCATGCTCATCTTTGGGTTTGTTGAGCTCTCTgtaagcctcttctctcatcatctc-tctctctctctctctctctctttctttcttttggttttctgcactttttgtctttctctgacccttacagtcattc-

upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0089g01010.t01 (Vitis vinifera), 5'ss of exon 2
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttct-tatgcttcaatcatcatccccatataaagaaaagctttagctaaaatg-atgccatg-
 || || || || ||| |||||||||||||||| |||||||| || || || || || ||||| ||||||||| | |||||||| || || |||||||| ||||  |       |    || | || |  |  |  |||   || ||    |   | ||||| |  ||||    |    || |    ||  || ||  | |  
AGGGACTGTGTTTCTCCTCTCCCTCCTTGGTGGGTTCCTCTCAGATTCTTATCTAGGGAGCTTTTGGACCATGTTGATCTTTGGGTTTGTGGAGCTCTCTgtaa--gtctttctacgtctg-acatgacttcctttttctcactatacatctgcttaatcattcatatatctcaacccactatctgcaacttgcatttcctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335697|gb|CO530823.1|CO530823
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|50332764|gb|CO527890.1|CO527890
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71306930|gb|DR789618.1|DR789618
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|94476942|gb|EB705900.1|EB705900
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|78079777|gb|DV508189.1|DV508189
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|76017380|gb|DT944550.1|DT944550
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|33466949|gb|CF243998.1|CF243998
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|78088571|gb|DV516964.1|DV516964
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|101396802|gb|EB820327.1|EB820327
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|76292338|gb|DV031906.1|DV031906
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|78088277|gb|DV516670.1|DV516670
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTGCTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|149061236|gb|EE157501.2|EE157501
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTGCTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|74241009|gb|DT648923.1|DT648923
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|101385636|gb|EB814866.1|EB814866
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71767934|gb|DR965871.1|DR965871
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTGCTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|38687834|gb|CK144865.1|CK144865
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCT
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCT
EST: gi|148930309|gb|EE284701.2|EE284701
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|74236266|gb|DT644180.1|DT644180
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCTACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|149112900|gb|EE295698.2|EE295698
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|93016178|gb|EB641698.1|EB641698
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|211168134|gb|FL415659.1|FL415659
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTTGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|74237025|gb|DT644939.1|DT644939
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|50333318|gb|CO528444.1|CO528444
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|76290056|gb|DV029624.1|DV029624
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|50322537|gb|CO517663.1|CO517663
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|78110837|gb|DV529235.1|DV529235
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|91056735|gb|EB167153.1|EB167153
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|148972660|gb|EE023621.2|EE023621
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCACGCGCACCTGCCGCAGCTTCCACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|148963669|gb|EE014730.2|EE014730
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|148935735|gb|EC879778.2|EC879778
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|149079412|gb|EE168389.2|EE168389
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71306901|gb|DR789605.1|DR789605
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTGCTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|76010434|gb|DT937604.1|DT937604
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|89764011|gb|DY690972.1|DY690972
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71770013|gb|DR967950.1|DR967950
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|148947537|gb|EC893008.2|EC893008
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71422731|gb|DR805807.1|DR805807
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|74234781|gb|DT642695.1|DT642695
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71765080|gb|DR963017.1|DR963017
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|93013965|gb|EB639485.1|EB639485
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71772995|gb|DR970916.1|DR970916
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|149112067|gb|EE295008.2|EE295008
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|89762598|gb|DY690114.1|DY690114
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|88757222|gb|DY541363.1|DY541363
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
EST: gi|71757757|gb|DR955694.1|DR955694
EST:     ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCG                         GGTTTCATCCTGCTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG
genomic: ACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 38 (downstream exon)
Score: 20

CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCGCCATGCGACATGATGGCGCCGGGGCAGGCGTGCGAGGAGGCGAGAGGCT


Block sizes: 49 (upstream exon), 35 (downstream exon)
Score: 29

CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCGCCATGCGACATGATGGCGCCGGGGCAGGCGTGCGAGGAGGCGAGAGGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 69

CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCGCCATGCGACATGATGGCGCCGGGGCAGGCGTGCGAGGAGGCGAGAGGCT


Block sizes: 25 (upstream exon), 35 (downstream exon)
Score: 5

CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaa ... gcactggcagGGTTTCATCCTACTGGCGGTTCAGGCGCACCTGCCGCAGCTTCGACCGCCGCCATGCGACATGATGGCGCCGGGGCAGGCGTGCGAGGAGGCGAGAGGCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCACCGTCTTCCTCATCTCCCTCCTTGGTGGCTTCCTCTCCGACTCCTACCTGGGCAGCTTCTGGACCATGCTCATCTTTGGATTCGTCGAGCTCTCGgtaacaggaaactaataattgcatataaactattcgttccttcttatgcttcaatcatcatccccatataaagaaaagctttagctaaaatgatgccatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT