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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgttttcctcctccttaccgatcctctgcccgttggtccgtttctgataaagccgctttctggatttctgcttggctgcgggatgtctcgctgccca...

Basic information

species Zea mays
transcript GRMZM2G127050_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 2
CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgtt-ttcctcctccttaccgatcctctgcccgttggtccgtttctgataa--agccgctttctggatttctgcttggctgcgggatgtctcgctgccca-
||| |||| ||||| ||||||||||||||||| || || ||||| || ||||||||||||||||||||||||||||| || ||||||||| ||||||| |||  ||| ||       ||| |   |  |  |  | ||  |   |||||||| |  ||  |  || |   ||| | | |  | |    |   || |  ||  | 
CGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTgtgagttattggaatatctttcttttgataagttcctttctgaatttctgatcaccaggagactttt---tttttccatatccgataaaca-ctggtcgcaaaa

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgttttcctcctccttaccgatcctctgcccgttggtccgtttctgataaagccgctttctggatttctgcttggctgcgggatgtctcgct-gccca-
 | || || |   ||||||| | ||||||||||||||| ||| | || ||||| ||||||| |||||| || || || || |||||||| || |||||||||| ||||  || |||  |     |  | |     |   |    |  || | |   |   || |     |    |           ||| ||  |    || 
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatc--tttactcttgtttatctcatctttt---cattcattcattcattcattgtttcatttattcag

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgtttt-cctcctccttaccgatcctctgcccgttggtccgtt-tctgataaagccgctttctggatttctgcttggctgcgggatgtctcgctgccca
 | || || ||  ||||||| ||||||||||||||||| ||| | || ||||| ||||||| |||||| || ||||| || |||||||| ||||||||||||| || ||  ||| |   ||    |  |   |   |  || | || | ||||  |  |  |   ||  |   || |||  ||    |              
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149009662|gb|EE041601.2|EE041601
EST:     CGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACT                         GGGAAAACCAGACAATTGAATGGGCTATGCGCCTGAGAGTTGCATACTACA
genomic: CGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgttttc ... tcttattcagGGGAAAACCAGACAATTGAATGGGCTATGCGCCTGAGAGTTGCATACTACA