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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatctaactcactgtcattttcag

Basic information

species Zea mays
transcript GRMZM2G126900_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgctta----ctgccgatgcaactgt-cgtc-gccacgcttctctaatctaactcactgtcat-tttcag--------
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||||     |  |||  ||  |  |   |  |    | | |  || || ||  | ||  || ||   |   |||  |||| |  | ||    |||         
CTCGACATGCCGCAGATCGAGCACCTCCTCCAGACCGCCGAGGCCATCCGCAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaa--ttaaactattttataaccgccacaaaaaccgtcactgtaattgcacatccaccgcgtcgccgcaatg-aactgataggcaggcctcacacgataca

upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatcta-actcactgtcattttcag----
 |||||   || ||||||||||| ||||| ||||| || || |||||| | || || ||||| || || ||||||||||| || ||||| || ||||||||||     |  ||| | || ||    | ||  |  || |  || | ||||   |  | ||    | | |    |   |||   | | |     
TTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaa--ttatactccctgatt--cggtttgatcacgtta-aaatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag

upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaact--gtcgtcgccacgcttctctaatctaactcactgtcattttcag------------
 ||||   ||| |||||||||||| |||||||||| || ||||||||||| || ||||| ||  ||||||| ||| | |||||||| |  || ||||| ||||    ||   ||  |    | |||   | ||    ||   | |  || |  ||||     |     |      ||||  ||   |||             
TTGGATGAGCCTCAGATCGAGCACTTGCTGCAGACAGCTGAGGCCATCCGAAAAGACTATCCTAACGAGGATTGGATGCACCTCACTGCTCTTATCCATGgtaaattctctgct--tcatctccttaaatcctatgaatagtattaggtagaggccagaggacctgtgtaaggaacactcccaacctcattgatattgtacg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31363556|gb|CD447913.1|CD447913
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78119916|gb|DV538300.1|DV538300
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|60396286|gb|DN229155.1|DN229155
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|15554177|gb|BI644175.1|BI644175
EST:     CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG