1 5' 3' | 2 5' 3' | 3 5' 3' |
CAAGGGGAGGAACAGCATTGGATGCCTGTTCTGGCTTTTGGCCAGGATGGTTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgctagcttatgatgtcgttcaaaatgacattggagatgtgatgagtccagacttataaccttggcattcttatatgataatgttgtttgcag
species | Zea mays |
transcript | GRMZM2G126821_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGCAGATGAGGGGCACTATCCTCCCTGGGCACCAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCGGGAGGAGEST: gi|30306590|gb|CD001263.1|CD001263
genomic: TCTGCAGATGAGGGGCACTATCCTCCCTGGGCAC-AAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|32850981|gb|CD990662.1|CD990662
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTTGATCTGTTCTTCTACAGAGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|30307128|gb|CD001801.1|CD001801
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|211208070|gb|FL437181.1|FL437181
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|6538929|gb|AW225068.1|AW225068
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|31362453|gb|CD446810.1|CD446810
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|110481295|gb|EE011014.1|EE011014
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TCTGCAGATGAGGGGCACTATCCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTTTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|5510808|gb|AI857192.1|AI857192
genomic: TCTGCAGATGAGGGGCACTAT-CCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|211518207|gb|FL037244.1|FL037244
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|30307129|gb|CD001802.1|CD001802
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|211540690|gb|FL218505.1|FL218505
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATNG GTGGGTTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAEST: gi|30032245|gb|CB834096.1|CB834096
genomic: TCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCAT-Ggtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGA
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|61118621|gb|DN559582.1|DN559582
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|32849968|gb|CD989649.1|CD989649
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTTGATCTGTTCTTCTACAGAGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|18964153|gb|BM660841.1|BM660841
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GNGGATTGGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|60351487|gb|DN218460.1|DN218460
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|149014517|gb|EE044146.2|EE044146
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|211211019|gb|FL456131.1|FL456131
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCARATGAGGGGCACTATCCTCCCTGGGCMCAAGTGGGAGGTCATG GTGGATTTGTTYTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|19770436|gb|BQ035157.1|BQ035157
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|28987078|gb|CB351453.1|CB351453
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|29543918|gb|CB604298.1|CB604298
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|24768430|gb|CA403559.1|CA403559
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|60351254|gb|DN218227.1|DN218227
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|12972713|gb|BG268119.1|BG268119
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCCAGAGGAAGCAAAGGAGCAGGAGGAEST: gi|21330457|gb|BQ485838.1|BQ485838
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCC-AGAGGAAGCAAAGGAGCAGGAGGA
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAEST: gi|83279186|gb|DV943194.1|DV943194
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCA
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTAGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAGEST: gi|31353712|gb|CD438069.1|CD438069
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
EST: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATG GTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
genomic: TTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgct ... ttgtttgcagGTGGATTTGTTCTTCTACAGGGACCCAGAGGAAGCAAAGGAGCAGGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGGGAGGAACAGCATTGGATGCCTGTTCTGGCTTTTGGCCAGGATGGTTCTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAGGTCATGgtatgatgctagcttatgatgtcgttcaaaatgacattggagatgtgatgagtccagacttataaccttggcattcttatatgataatgttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG