Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag

Basic information

species Zea mays
transcript GRMZM2G126821_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g08440.1 (Oryza sativa), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaat--tgttatggtggtgattgtttgcag
 ||||| ||||| || |||||||| || || || |||||||||||||||||||||||||| || ||||||||||| || ||||||||||| || || |||||||| |  ||  |  | |||  ||   |      || |||| | |    | ||||   || ||  ||| ||  ||||||  ||     ||| |||||
TGCTGGAAGGCATACGCCTGGTACATTTACCAATCAGCTCCAGACCTCCTTCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatgatcaccatgtcacggtagtgcg----ttggtgaattggg--tacagt---attgtttactgatcgtgttatcctgaattatgtctgcag

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacaga-atttcagtttcaaagttcagaaata--tttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag-----------------------------------------------------------
 ||||| |||||||| || ||||||||||| || ||||| ||||| || ||||| |||||||| || || ||||| || || ||||| || || || |||||| | |   |  |||| ||||||    | |  |   |||||| | | |  | |  | ||   || |||  | |||  | |  ||    |||||||| |                                                           
TGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAGACTTCGTTCAGTGAGCCTCGTCTCCTTATCCTCACTGATCCAAGAACAGATCACCAGgtggatacccaaatcagcttcaaatgatatatttgattttagttacttgtgctttgattg-attgttgacatgatttatgttatgtatgttgtttgcggttgttgtggtgttgactgtgttgtgttgttaatgtgtgtgtttgttcgtttgtgtgcag

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G04890.1 (Glycine max), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacag---aatttcagtttca---aagttcagaaatatttagtgagtggaccct-gcagtgtgatggtgaactaattgttatggtggt---------gattgtttgcag----------------------------------------------------------
 ||||| |||||||| |||||||||||||| || ||||| || || ||||||||||||||||| || || || |||||||| ||||| || || || ||||| |  |    | |||||  | ||   |  |  ||||| |   |   | | ||  || |     ||  | |  | | ||||||   || ||         |||||||||                                                             
TGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcag

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT3G04770.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag-
 ||||| || ||||| |||||||| |||||||||||  | ||||| || ||||| |||||| || || | || || ||||||||||| || |||||||||||  |  |||| |  |||| |    |||  | |     |||| |  ||  || ||  |  ||||      | ||   |  ||||   |||||||   
TGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGgtatattgaatgt--gttttac--ctcatcagtt----gtgatttaactgtgtaggtttttggttttgctaatgcggttttggtttgtgtttgccag

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT1G72370.2 (Arabidopsis thaliana), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag
 ||||| || ||||| |||||||||||||| || ||| | ||||| |||||||| || ||  ||||| | || ||||| |||||||| |||||||| ||||| |||     ||||     |   |||| | |    |||||| ||     ||   | || |  |||  ||| |||  ||   |||     ||||||
TGCTGGAAGACACACTCCTGGTACCTTCACCAATCAGATGCAGACATCCTTCAGTGAACCAAGGCTGTTGATTCTTACTGACCCAAGAACTGACCACCAGgtaaact---cttca----tatgattcatatac---tagtgattgattaatgatttttgttattga--taaatgtcttgtgtgtg-----ttgcag

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgt----gaacagaatttcagtttcaaagttcagaaat--atttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag
 ||||| |||||||| || ||||| ||||| || ||||||||||| || ||||| ||||| || || |||||||| || |||||||| ||||| || |||||    ||| |  |      |||  || ||| |   |   ||| |    | |        |   |   ||  |||| || || | |     |        | 
TGCTGGAAGGCACACACCAGGTACATTCACCAATCAGCTCCAGACATCTTTCAGTGAGCCCCGTCTTCTCATCCTCACAGACCCAAGAACTGATCACCAGgtaagtgaataacacacatctttataaattctgtttttagtttgggttttagggttcaaggaaggtgcgtagactactttttctagc--caaccagggaaat

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ20712 (Selaginella moellendorffii), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag
||| ||||||||||||||||| || ||||| || |||||||||| |||||||   |||||||| || ||||| || || || ||  | || || || ||||| |      |  |    || |      ||  | |||  | | |||   |     | || |      ||   |||| |    |             
CGCCGGGAGGCACACCCCTGGAACTTTCACCAATCAGCTCCAGAACTCCTTCTCGGAGCCTCGCCTCCTCATTCTCACGGATCCGCGCACCGATCACCAGgtaagtttgctcgctcgatctag--cacgacttttttcctcattggtttccttcttttgttttgtgtctgtgtgttcttccag-------------

upper sequence: GRMZM2G126821_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ32709 (Selaginella moellendorffii), 5'ss of exon 2
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatt--tcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag
||| ||||||||||||||||| || ||||| || |||||||||| |||||||   |||||||| || ||||| || || || ||  | || || || ||||| |      |   ||  | |   |   |     |  | | ||  |     ||   || |  || ||      || ||   |                
CGCCGGGAGGCACACCCCTGGAACTTTCACCAATCAGCTCCAGAACTCCTTCTCGGAGCCTCGCCTCCTCATTCTCACGGATCCGCGCACAGATCACCAGgtaagtttgctcgctcgatctagcacgacttttttcctcattggtttccttcttttgttttgtg-tgtgtgtgttcttccag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355138|gb|CD439495.1|CD439495
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211398272|gb|FL293836.1|FL293836
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|33101681|gb|CF061641.1|CF061641
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACCATCCCCACCATTGCCTTCTGTGA
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAAC-ATCCCCACCATTGCCTTCTGTGA
EST: gi|30306590|gb|CD001263.1|CD001263
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31361726|gb|CD446083.1|CD446083
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31349731|gb|CD434088.1|CD434088
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211395649|gb|FL293822.1|FL293822
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211395641|gb|FL293814.1|FL293814
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGGCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|32850981|gb|CD990662.1|CD990662
EST:     TCAGCGAGCCTCGACTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACCATCCCCACCATTGCCTTCTGTGA
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAAC-ATCCCCACCATTGCCTTCTGTGA
EST: gi|6564117|gb|AW231739.1|AW231739
EST:     TCAGCGAGCCTCGACTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|20512934|gb|BQ280120.1|BQ280120
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|148940170|gb|EC884930.2|EC884930
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31355003|gb|CD439360.1|CD439360
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31360330|gb|CD444687.1|CD444687
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|32910085|gb|CF014897.1|CF014897
EST:     TCAGCGAGCCTCGACTGCTCGTCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149014518|gb|EE044147.2|EE044147
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31628197|gb|CD526489.1|CD526489
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|87151812|gb|DY396601.1|DY396601
EST:     TCAGCGAGCCTCGACTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211540690|gb|FL218505.1|FL218505
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211395648|gb|FL293821.1|FL293821
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAAGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|148965698|gb|EE016561.2|EE016561
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211540691|gb|FL218506.1|FL218506
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGKGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31612195|gb|CD568817.1|CD568817
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31353313|gb|CD437670.1|CD437670
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|18964153|gb|BM660841.1|BM660841
EST:     TCAGCGAGCCTCGACTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31353712|gb|CD438069.1|CD438069
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|148959151|gb|EE010618.2|EE010618
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|67037375|gb|CO464213.1|CO464213
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31355252|gb|CD439609.1|CD439609
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|28987078|gb|CB351453.1|CB351453
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31353393|gb|CD437750.1|CD437750
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|30087259|gb|CB885467.1|CB885467
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|20300615|gb|BQ163558.1|BQ163558
EST:     TCAGCGAGCCTCGACTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCT
EST: gi|20507410|gb|BQ279619.1|BQ279619
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|20802825|gb|BQ293875.1|BQ293875
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|5268395|gb|AI770359.1|AI770359
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211395646|gb|FL293819.1|FL293819
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|211395638|gb|FL293811.1|FL293811
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149081112|gb|EE170216.2|EE170216
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|24768430|gb|CA403559.1|CA403559
EST:     GCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: GCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|148981763|gb|EE027869.2|EE027869
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|22472740|gb|BU037220.1|BU037220
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149095196|gb|EE180817.2|EE180817
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|67028726|gb|CO457475.1|CO457475
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149108470|gb|EE292795.2|EE292795
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|88757934|gb|DY542075.1|DY542075
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31353757|gb|CD438114.1|CD438114
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|7216530|gb|AW562652.1|AW562652
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149084483|gb|EE173945.2|EE173945
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|21330457|gb|BQ485838.1|BQ485838
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|31355761|gb|CD440118.1|CD440118
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|148959775|gb|EE011015.2|EE011015
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|149082244|gb|EE171430.2|EE171430
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
EST: gi|20301420|gb|BQ164363.1|BQ164363
EST:     TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAG                         CCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT
genomic: TCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 487

CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 509

CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 303

CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 180

CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaa ... ttgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTGGGAGGCACACCCCTGGTACCTTCACTAACCAGCTCCAGACCTCCTTCAGCGAGCCTCGGCTGCTCATCCTTACCGACCCAAGGACTGACCATCAGgtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaattgttatggtggtgattgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT