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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgattccatgtgttactgtgctagttgctactattttcaatgataaacaaattctgttcctgcattcaccacttaacaggcacattttaagtcta...

Basic information

species Zea mays
transcript GRMZM2G126795_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 2
GTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgattccatgtgttactgtgctagttgctactattttcaatgataaacaaattctgttcctgcattcaccacttaacaggcacattttaagtcta
||  |||||||||| ||||| || ||||| || || ||||| |||||| | || |||||||||| |||| |||||||||||||| | | ||  ||||    |  |        ||| |||||||        ||   |  |  |   |||   | |          | | | |   | 
GTCTTGAAGAAAATGTCAGCTCGCCAAATTGCGAAGACAGCATCACCGATAGACCAATTTCGATATGCACTGCAACAGgtcagtcacttcacatgttttacttttgaaaatgtctactttcaatagctccttaaacatagtggtatgttcctaaatggttttatgtactgtgaaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148964723|gb|EC905989.2|EC905989
EST:     TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG                         GGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
genomic: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgatt ... cttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
EST: gi|148974442|gb|EE025221.2|EE025221
EST:     TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG                         GGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
genomic: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgatt ... cttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT